Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1163
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    27   0.20 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.46 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    24   1.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   9.8  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 511 DEKPEEIITAARRRMNHELGIPLDQLDPE----LFTFMTRVHY 627
           D + E IIT + RRM   L + +  LDP     LF  MT  H+
Sbjct: 34  DLQTEMIITKSGRRMFPALNLKITDLDPSADYCLFLEMTLAHH 76


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -1

Query: 699 LNVALEEQYVVDLVFAQHSITRVVIVHAGHERKQFRVQLI*WDSQFMVHPTSGCRYDF 526
           + V L ++ ++D+V    S +  +  H  H++    +  + + +Q  +HP    RY F
Sbjct: 110 VEVCLGDEVIIDVVNHLSSDSTTIHWHGHHQKNSPYMDGVPFVTQCPIHPGMTFRYHF 167


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 218 FRTCETCYSR*GCLELAQAEALDKDICLLVDEKDNFIGTA 337
           F++ +T  ++  C +L +       IC LVD  +N  G A
Sbjct: 204 FKSAKTPPNKLNCYDLRRVRKNYNSICELVDAFNNIYGLA 243


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 211 NLFSTLRVLHSDLVSFL 161
           N+F  L++L++D+V+ L
Sbjct: 352 NVFDVLKLLYNDIVNML 368


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 503 VDGCSKHLCSNRD 465
           VDGC KH   N D
Sbjct: 147 VDGCQKHPLCNDD 159


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 516 EARGNHNGSQT*DEP*TG 569
           ++RG HN S++  +P TG
Sbjct: 205 QSRGRHNQSRSKRQPKTG 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,765
Number of Sequences: 336
Number of extensions: 3790
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)