Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1163
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    85   1e-17
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    31   0.16 
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    29   0.86 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   6.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 34/75 (45%), Positives = 54/75 (72%)
 Frame = +2

Query: 281 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 460
           L +++C++VDE D  +   TK+ECH +      LLHRAFS+F+F+++  + LQ+R+ +K+
Sbjct: 17  LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76

Query: 461 TYPDYYTNACCSHPL 505
           T+P  +TN CCSHPL
Sbjct: 77  TFPSLWTNTCCSHPL 91



 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +1

Query: 508 LDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGVLGEHEIDHILFFQ 687
           L E  E +  AA+R++ HELGI    +  + F F+TR+HY  P  G  GEHEID+ILFF+
Sbjct: 101 LPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFK 160

Query: 688 SDVKV 702
             V++
Sbjct: 161 GKVEL 165


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +2

Query: 161 QKANKITVEHPKSREKIFGFRTCETCYSR*GCLELAQAEALDKDICL 301
           QKA  + +   K RE +    TCE CY   GCL    AE  D + CL
Sbjct: 110 QKAG-VGLSGSKQREVVHHEGTCEICYDE-GCLPFFSAEC-DHEFCL 153


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 296 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 388
           C++VDE DN I +A  R      PDGDV  H
Sbjct: 34  CIIVDENDNVIMSAGNRV-----PDGDVTQH 59


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 262 FQTSLSRVAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCMNFTELHFYI 113
           + T LS  +   GS A N F+ +  LH D+ +   ++F   +    +FYI
Sbjct: 166 YLTGLSGGSWLVGSVAVNNFANITFLHDDVWNLDHSLFAPYDDAFENFYI 215


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 560  WFILRLAAVMISSGFSSSTVDGCS 489
            W++  L++  + +GF+ +T+DG S
Sbjct: 1171 WYVSALSSYSVPAGFAWTTIDGFS 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,195
Number of Sequences: 5004
Number of extensions: 61835
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)