Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1163
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736...    94   1e-19
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    93   3e-19
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    31   0.68 
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    29   4.8  
05_04_0073 + 17669311-17671635                                         28   8.4  

>07_03_0796 +
           21572131-21572204,21573427-21573482,21573580-21573671,
           21574103-21574205,21574297-21574434,21574654-21574907
          Length = 238

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 LELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDMF 433
           ++  Q   +  D C+LVDE+DN +G  +K  CH +   + + LLHRAFSVFLFN + ++ 
Sbjct: 13  MDEVQKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELL 72

Query: 434 LQRRSSQKVTYPDYYTNACCSHPLY 508
           LQ+RS+ KVT+P  +TN CCSHPLY
Sbjct: 73  LQQRSATKVTFPLVWTNTCCSHPLY 97



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 30/74 (40%), Positives = 45/74 (60%)
 Frame = +1

Query: 487 LLQPSTVLDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGVLGEHEI 666
           L + S ++ E    +  AA+R++  ELGIP + +  + FT + R+ Y  P DG  GEHE+
Sbjct: 96  LYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPVDQFTPLGRMLYKAPSDGKWGEHEL 155

Query: 667 DHILFFQSDVKVKP 708
           D++LF   DVKV P
Sbjct: 156 DYLLFIVRDVKVVP 169


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 LELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDMF 433
           ++  Q   + +D C+LVDE+DN IG  +K  CH +   +   +LHRAFSVFLFN + ++ 
Sbjct: 69  MDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYELL 128

Query: 434 LQRRSSQKVTYPDYYTNACCSHPLY 508
           LQ+RS+ KVT+P  +TN CCSHPLY
Sbjct: 129 LQQRSATKVTFPLVWTNTCCSHPLY 153



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 27/74 (36%), Positives = 46/74 (62%)
 Frame = +1

Query: 487 LLQPSTVLDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGVLGEHEI 666
           L + S ++++K   +  AA+R++  ELGI  ++L  + F  + R+ Y  P DG  GEHE+
Sbjct: 152 LYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPVDQFIPLGRMLYKAPSDGKWGEHEL 211

Query: 667 DHILFFQSDVKVKP 708
           D++LF   DV++ P
Sbjct: 212 DYLLFMVRDVELSP 225


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 344 RECHKVGPDGDVLLHRAFSVFLFNKR-GDMFLQRRSSQKVTYPDYYTNACCSH 499
           R   +V  DGD   HRA  V+++++  G++ LQRR+  K T+P  +  +   H
Sbjct: 47  RIASEVHRDGDY--HRAVHVWIYSESTGELLLQRRADCKDTWPGQWDISSAGH 97


>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
            1279204-1279336,1279425-1279551,1279788-1280284,
            1280578-1280642,1280722-1280823,1281020-1281162,
            1281761-1281816,1282214-1282869,1282975-1283165,
            1283280-1283574,1283738-1283778,1284082-1284104,
            1284173-1284369,1284472-1284581,1285309-1285639,
            1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 281  LDKDICLLVDEKDNF--IGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQ 439
            +D D  LL   ++ +  +G      C  +G + D+L    FS F+  K G MFL+
Sbjct: 862  VDADRSLLTQREEQYARVGGVAVEFCVHIGRN-DILFDTVFSKFVAAKSGGMFLE 915


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 62  LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 211
           LL+ R  R T LF+ +C V      +  +  V   A   T+ HP+ R K+
Sbjct: 706 LLSWRDPRATALFVTFCFVAAIVLYVTPFRVVVFLAGLYTLRHPRFRHKM 755


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,653,853
Number of Sequences: 37544
Number of extensions: 392211
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)