Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1163
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   3e-22
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 29   2.8  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   29   2.8  
SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)                    28   8.5  

>SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score =  102 bits (244), Expect = 3e-22
 Identities = 48/95 (50%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
 Frame = +2

Query: 227 CETCYSR*GCLELAQAEALDKDICLLVDEKDNFIGTATKRECH-KVGPDGDVLLHRAFSV 403
           C    +  G L++ Q   L++  C+LVD  DN  G ATKRECH K       LLHRAFSV
Sbjct: 29  CHRLMAHEGDLDVTQRRLLEEQ-CILVDTDDNVQGCATKRECHLKENIVEQGLLHRAFSV 87

Query: 404 FLFNKRGDMFLQRRSSQKVTYPDYYTNACCSHPLY 508
           FLFN +GD+ +Q+R+  K+T+P  +TN+CCSHPLY
Sbjct: 88  FLFNSKGDLLIQQRADTKITFPGLFTNSCCSHPLY 122



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
 Frame = +1

Query: 478 HKCLLQPSTVLDEKPEE----IITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDG 645
           + C   P  V  E  E     +  AA+RR+ +ELGIP  ++  + F F+TR+HY    D 
Sbjct: 114 NSCCSHPLYVESEMEENECLGVKRAAKRRLEYELGIPQKEVTLDDFQFLTRIHYKASSDK 173

Query: 646 VLGEHEIDHILFFQSDVKVKP 708
           + GEHEID++LF Q DV + P
Sbjct: 174 IWGEHEIDYVLFIQKDVTLAP 194


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 128 FSKIHTYENVGQKANKITVEHPKSREKIFGF 220
           F +IH     G +  KIT  HPK++ ++ GF
Sbjct: 760 FHRIHRVHREGFRHKKITPRHPKAQGQVEGF 790


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 186 STLRVEKRFLASEPVKPATLDKDVWN*PRQKL*IKIFAC*LMKR 317
           S ++VE+  LAS PV+ AT    V N    K  I++ +C LMKR
Sbjct: 170 SEVKVERTCLASLPVRTATTTTMVQNQDEPKT-IELASCDLMKR 212


>SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)
          Length = 541

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = -3

Query: 556 SSYVWLPL*FPRASHLVQWMAAASICVVI------GICYFLA*SPLKEHITSLVEEENTE 395
           SSY+  PL   R S L+    A   C +       G+C +L  +PL+  +         E
Sbjct: 216 SSYLLTPL---RGSVLLPSRPATRECALTFSHRYEGVCSYLL-APLRGSVLLPSHTATRE 271

Query: 394 CSME*HITIRSYFMTFS 344
           C++  HI +R   +TFS
Sbjct: 272 CALTSHIAMRECALTFS 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,941,788
Number of Sequences: 59808
Number of extensions: 464111
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)