Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1163
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase...    93   1e-19
At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase...    91   9e-19
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    30   1.3  
At5g06850.1 68418.m00774 C2 domain-containing protein contains I...    29   3.0  
At1g51570.1 68414.m05804 C2 domain-containing protein contains I...    28   5.3  

>At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase I
           / isopentenyl diphosphate:dimethylallyl diphosphate
           isomerase I (IPP1) identical to SP|Q38929
          Length = 233

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 LELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDMF 433
           ++  Q   + +D C+LVDE D  +G  TK  CH +   + + LLHRAFSVFLFN + ++ 
Sbjct: 9   MDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELL 68

Query: 434 LQRRSSQKVTYPDYYTNACCSHPLY 508
           LQ+RS  KVT+P  +TN CCSHPLY
Sbjct: 69  LQQRSKTKVTFPLVWTNTCCSHPLY 93



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 28/74 (37%), Positives = 46/74 (62%)
 Frame = +1

Query: 487 LLQPSTVLDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGVLGEHEI 666
           L + S +++E    +  AA+R++  ELGI  + +  + FT + R+ Y  P DG  GEHE+
Sbjct: 92  LYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEV 151

Query: 667 DHILFFQSDVKVKP 708
           D++LF   DVK++P
Sbjct: 152 DYLLFIVRDVKLQP 165


>At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II
           / isopentenyl diphosphate:dimethylallyl diphosphate
           isomerase II (IPP2) identical to isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase (IPP2)
           GB:U49259 [Arabidopsis thaliana]
          Length = 284

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 LELAQAEALDKDICLLVDEKDNFIGTATKRECHKV-GPDGDVLLHRAFSVFLFNKRGDMF 433
           ++  Q   + +D C+LVDE D  +G  +K  CH +   +   LLHRAFSVFLFN + ++ 
Sbjct: 60  MDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELL 119

Query: 434 LQRRSSQKVTYPDYYTNACCSHPLY 508
           LQ+RS+ KVT+P  +TN CCSHPLY
Sbjct: 120 LQQRSNTKVTFPLVWTNTCCSHPLY 144



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/74 (37%), Positives = 45/74 (60%)
 Frame = +1

Query: 487 LLQPSTVLDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGVLGEHEI 666
           L + S ++ +    +  AA+R++  ELGI  + +  + FT + R+ Y  P DG  GEHE+
Sbjct: 143 LYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEL 202

Query: 667 DHILFFQSDVKVKP 708
           D++LF   DVKV+P
Sbjct: 203 DYLLFIVRDVKVQP 216


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 56  VKLLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 211
           + LL+ R  R T LF+L+C +      +  ++ V   A    + HP+ R K+
Sbjct: 699 LSLLSWRDPRATTLFVLFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKL 750


>At5g06850.1 68418.m00774 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 669

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 62  LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 211
           LL+ R  R T LF+++C V      +  ++ +        + HPK R K+
Sbjct: 601 LLSWRDPRATCLFVIFCLVAAMILYVTPFKIIALAGGMFWMRHPKFRSKM 650


>At1g51570.1 68414.m05804 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 776

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 62  LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 211
           LL+ R  R T LF+L+C +      I  ++ V        + HP+ R K+
Sbjct: 708 LLSWRDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKL 757


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,622
Number of Sequences: 28952
Number of extensions: 319442
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)