Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1162
         (783 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q21IE6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_A7TME0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  

>UniRef50_Q21IE6 Cluster: Putative uncharacterized protein; n=1;
           Saccharophagus degradans 2-40|Rep: Putative
           uncharacterized protein - Saccharophagus degradans
           (strain 2-40 / ATCC 43961 / DSM 17024)
          Length = 378

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 433 IHLSNRPPFPQKEIYSSSEHS*SPVKQTTNIKNRWR 326
           I+ S +   P   IYS S  + +P+KQ TN  NRWR
Sbjct: 40  IYFSAKTVGPSSSIYSKSSETSAPIKQITN-DNRWR 74


>UniRef50_A7TME0 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 646

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 466 VKLRPATKLETIHLSNRPPFPQKEIYSSSEHS*SPVKQTTNIKNR 332
           +K+ PA K + I  S   P  + E+ SSSE S +P   T+++KNR
Sbjct: 395 IKVVPAIKSKRIE-SRHKPHERTEVLSSSESSSNPTDFTSHVKNR 438


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,710,043
Number of Sequences: 1657284
Number of extensions: 12423820
Number of successful extensions: 21316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21306
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)