Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1162
         (783 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071071-1|AAL48693.1|   68|Drosophila melanogaster RE14453p pro...    32   1.0  
BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p pro...    31   2.3  
AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-P...    31   2.3  

>AY071071-1|AAL48693.1|   68|Drosophila melanogaster RE14453p
           protein.
          Length = 68

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 583 NNFIYFMLFLYFMCLKSYIK 524
           N +I+FM FLY +CL  Y+K
Sbjct: 7   NIYIFFMFFLYILCLSLYVK 26


>BT023949-1|ABB36453.1| 1312|Drosophila melanogaster IP03879p protein.
          Length = 1312

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -3

Query: 508  NRPKIKTQLNI*TEVKLRPATKLETIHLSNRPPFPQKEIYSSSEHS*SPVKQT 350
            N       +NI   V+L     LE   L  R P P+ EI    EH   P  +T
Sbjct: 960  NNNNNNNNININNSVRLESDNGLEASELEEREPEPETEIEPEHEHEHEPEPET 1012


>AE014298-2334|AAF48566.2| 1311|Drosophila melanogaster CG32577-PA
            protein.
          Length = 1311

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -3

Query: 508  NRPKIKTQLNI*TEVKLRPATKLETIHLSNRPPFPQKEIYSSSEHS*SPVKQT 350
            N       +NI   V+L     LE   L  R P P+ EI    EH   P  +T
Sbjct: 959  NNNNNNNNININNSVRLESDNGLEASELEEREPEPETEIEPEHEHEHEPEPET 1011


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,501,650
Number of Sequences: 53049
Number of extensions: 594125
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)