Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1161X
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   1.9  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.5  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   7.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   7.6  

>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 416 NAKKTVDKEAQIFCHN-TNMAVKYDNNNLQMLDKDSC 309
           N   T+D EAQ F HN +  +V +DN+N     + +C
Sbjct: 59  NPDPTMDLEAQTFNHNESTTSVGHDNSNSPPKCRKTC 95


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 449 YENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNLQMLD 321
           YEN CK+ K   ++ ++++    F  N N    YD+N     D
Sbjct: 804 YEN-CKLGKLNLSETSINERVMGFSTNINETDNYDDNETTQSD 845


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 357 RHICIMTKYLCFFIYCFFRVSVFIYFAVIFV 449
           RH       L  F YC F +  F  FA + +
Sbjct: 319 RHFSFGIVVLAIFSYCNFGIKQFFLFAAVMI 349


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 421 TETRKKQ*IKKHKYFVIIQIWRSNMTIIIY 332
           TE  K+     H   V +++W+S M  +IY
Sbjct: 758 TEPFKRSSSNVHDKIVFLEVWKSIMAALIY 787


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,176
Number of Sequences: 5004
Number of extensions: 43421
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)