Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1161X
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    31   0.57 
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 394 KKHKYFVIIQI-WRSNMTIIIYRCWIKIAVKSFCHLNTF 281
           KKH+ ++ + I W  NM I  Y  W+    KS  ++N F
Sbjct: 210 KKHRMWINMAITWSPNMPIYSYFAWLASDWKSLAYINAF 248


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 467  WKSYAQYENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNL 333
            WK+Y +    C+I +N NA++ +  E  IF H  N+++   N NL
Sbjct: 1315 WKNYLE-AMICRILENENAEQELVIENSIFKH-LNVSMNRKNKNL 1357


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 467  WKSYAQYENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNL 333
            WK+Y +    C+I +N NA++ +  E  IF H  N+++   N NL
Sbjct: 1315 WKNYLE-AMICRILENENAEQELVIENSIFKH-LNVSMNRKNKNL 1357


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 561 LKIRCGYRNIHYTTKYALIIFI 496
           L   CGYRNIHY    ++I+ I
Sbjct: 306 LLFSCGYRNIHYFEVASVILII 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,937
Number of Sequences: 27780
Number of extensions: 237827
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)