Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1160
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A0078 Cluster: UPI00006A0078 related cluster; n...    35   1.7  
UniRef50_Q1JVJ3 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_UPI00006A0078 Cluster: UPI00006A0078 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A0078 UniRef100 entry -
           Xenopus tropicalis
          Length = 98

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 463 TSPYTPTHERRPTHTASVTLTPRAATTSPRGIRFVNLHTIFHYGHCVKLYMRLQHYHRH 287
           T  +T TH    TH  S+TL P   ++SP  I F+  H +      +++Y +L HY+ H
Sbjct: 40  TLTHTHTHTHTHTHPCSLTLNPE-LSSSPYQIHFLG-HLL-----ALEIYKKLHHYYHH 91


>UniRef50_Q1JVJ3 Cluster: Putative uncharacterized protein; n=1;
           Desulfuromonas acetoxidans DSM 684|Rep: Putative
           uncharacterized protein - Desulfuromonas acetoxidans DSM
           684
          Length = 116

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 445 THERRPTHTASVTLTPRAATTSPRGIRFVNLHTIFHYGHCVKLYMRL--QHYHRHRSTPC 272
           +  RR   T S+ LT  A      G+    LH +FH GH    +  L  QH  +HR  PC
Sbjct: 5   SRHRRSVPTLSLWLTALAVFYLTIGVHL--LHPLFHQGHEDSPHHALAYQHSEQHRHAPC 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,395,844
Number of Sequences: 1657284
Number of extensions: 13604955
Number of successful extensions: 31926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31865
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)