Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1160
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   2.6  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.9  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 368 NPTWTGRSSPRRQCDARG 421
           NP+WT   + R  CDA+G
Sbjct: 208 NPSWTWEQTVRELCDAKG 225


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 520 LDTGLRFFFRFLINMS*QIYSMNTLLYRVAHKSFEK 627
           + T    F  FL+  S ++ S N+ LY + HK FEK
Sbjct: 317 MGTSATLFNTFLLEWSQEVTS-NSTLYDIIHKVFEK 351


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 447 PHMSEDPHTPRASH*RRGLLRPVHVGLDSLTYTPF 343
           PHM  DP T   +H     L P   G  S+   P+
Sbjct: 192 PHMGVDPSTMADAHNAHSSLTPPQSGYSSMPSLPY 226


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
 Frame = -2

Query: 472 DDLTSPY---TPTHERRPTHTASVTLTPRAATTSPRGIRFVNLHTIFHYGHCVKLYMRLQ 302
           D L+ PY   TP  +        + L P     S     F+N H + H  H    + ++ 
Sbjct: 174 DPLSFPYLPPTPAEDEHKKPPLKIQLPPYEEALSIVSQFFMNDHFLVHIHHPASFFEKMH 233

Query: 301 HYHRHRST 278
            Y++   T
Sbjct: 234 MYYKTGKT 241


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -2

Query: 508 PHSSY*GPW*SVDDLTSPYTPTHERRPTHTASVTLTPRAATTSPRGIRFVNLHTIFHYGH 329
           P+S+Y     S+D+  +P        P   +S + +   + T     R  +L+ +FH   
Sbjct: 270 PNSTYQNILNSLDN--NPAVLDLNGPPNQESSSSASSYGSRTQTPNARSCSLNIVFHKHK 327

Query: 328 CVKLYMRLQHYHRHR 284
            V  Y  ++HY + R
Sbjct: 328 KVCTYYMIRHYAKRR 342


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  ARSTRREHTKLNYHKDITSTMET 88
           A S R +HT+ NY+KD++    +
Sbjct: 303 ASSNRTQHTEDNYNKDVSDAQNS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,081
Number of Sequences: 5004
Number of extensions: 58838
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)