Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1160
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)               31   0.90 
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.4  
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  28   6.4  
SB_27949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)
          Length = 455

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 442 HERRPTHTASVTLTPRAATTSPRG 371
           H +  T T+S+T++PR  T SPRG
Sbjct: 208 HGKSRTETSSITISPRHPTNSPRG 231


>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 594 QCVHGINLSRHIYKESKEKSQTGIQFIASRTVPIEVR 484
           +C+HG+N+   +Y++S+++ +        R +P E R
Sbjct: 315 ECIHGVNIYLGLYRDSRDQLRGKTAHKTGRQIPKEFR 351


>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/64 (34%), Positives = 26/64 (40%)
 Frame = -2

Query: 445 THERRPTHTASVTLTPRAATTSPRGIRFVNLHTIFHYGHCVKLYMRLQHYHRHRSTPCRT 266
           TH +RP H    TL    +  +PR   +   HT  HY H      R  HY R   T   T
Sbjct: 47  THTKRPIHDTRSTLDAHTSHYTPRTSHYTR-HT-SHYTH------RTSHYTRRMRTVHAT 98

Query: 265 VKTL 254
             TL
Sbjct: 99  YITL 102


>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 433 RPTHTASVT--LTPRAATTSPRGIRFVNLHTIFHYGHCVKLYMRLQHYHRHRSTPCR 269
           RP  TA ++  +T   AT S      +  +    Y H V     ++HY+ HR  PC+
Sbjct: 48  RPALTAPISSGITTGTATPSVNSTNIIRHYYWHRYAH-VNSTNIIRHYYWHRYAPCK 103


>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 717

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 346 IFHYGHCVKLYMRLQHYHRHRST-PCR 269
           IF  G C ++Y  LQ Y +H+S+  CR
Sbjct: 31  IFQCGRCRQMYTNLQKYLKHKSSRECR 57


>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -2

Query: 463 TSPYTPTHERR---PTHTASVTLTPRAATTSPRGIRFVNLHTIFHYGH 329
           T PY  T E     P + A V L   A   SP  I     HT+ HYG+
Sbjct: 314 THPYFATAEPSVDDPAYVAIVILVFNATVNSPVMIPMFPSHTLRHYGY 361


>SB_27949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 508 PHSSY*GPW*SVDDLTSPYTPTHERRPTHTASVTLTPRAATTSP 377
           PH S   P   V ++TSP TP+H R  + + S +++  +  T+P
Sbjct: 198 PHGSNRLP---VKNVTSPRTPSHSREGSASLSSSVSTSSTLTAP 238


>SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 379 PRGIRFVNLHTIFHYGHCVKLYMRLQHYHRHRSTP 275
           P    +  L  +FH GH V +Y R  HY + +  P
Sbjct: 209 PANPGYALLLRLFHSGHEVTVYKRNDHYSKFQRVP 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,658,674
Number of Sequences: 59808
Number of extensions: 448532
Number of successful extensions: 1738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)