Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1160
         (701 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119010-1|AAM50870.1|  142|Drosophila melanogaster LP03924p pro...    30   2.6  
AL024484-3|CAA19670.1|  146|Drosophila melanogaster EG:96G10.3,F...    30   2.6  
AE014298-499|AAF45855.1|  146|Drosophila melanogaster CG10788-PB...    30   2.6  

>AY119010-1|AAM50870.1|  142|Drosophila melanogaster LP03924p
           protein.
          Length = 142

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 460 SPYTPTHERRPTHTASVTLTPRAATT--SPRGIRFVNLHTIFHYGHCVKLYMRLQHYHRH 287
           S  T T     T TAS T T  AATT  S    +       +HY   V    R++H +RH
Sbjct: 30  SATTTTSASATTTTASDTTTTTAATTTTSSSSSKSKKKKRTYHYTRHVYRPKRIRHIYRH 89

Query: 286 RS 281
           ++
Sbjct: 90  KA 91


>AL024484-3|CAA19670.1|  146|Drosophila melanogaster
           EG:96G10.3,FBgn0010295;ng3 protein.
          Length = 146

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 460 SPYTPTHERRPTHTASVTLTPRAATT--SPRGIRFVNLHTIFHYGHCVKLYMRLQHYHRH 287
           S  T T     T TAS T T  AATT  S    +       +HY   V    R++H +RH
Sbjct: 34  SATTTTSASATTTTASDTTTTTAATTTTSSSSSKSKKKKRTYHYTRHVYRPKRIRHIYRH 93

Query: 286 RS 281
           ++
Sbjct: 94  KA 95


>AE014298-499|AAF45855.1|  146|Drosophila melanogaster CG10788-PB
           protein.
          Length = 146

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 460 SPYTPTHERRPTHTASVTLTPRAATT--SPRGIRFVNLHTIFHYGHCVKLYMRLQHYHRH 287
           S  T T     T TAS T T  AATT  S    +       +HY   V    R++H +RH
Sbjct: 34  SATTTTSASATTTTASDTTTTTAATTTTSSSSSKSKKKKRTYHYTRHVYRPKRIRHIYRH 93

Query: 286 RS 281
           ++
Sbjct: 94  KA 95


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,666,971
Number of Sequences: 53049
Number of extensions: 648248
Number of successful extensions: 1526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)