Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1160
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 529 RYPIYREPHSSY*GPW*SVDDLTSPYTPTHERRPTHTASVTLTPRAATTSPRGIRFVNL 353
           +Y    E H SY  P    ++  + + P H R  T     T TP  +T +PR +R + L
Sbjct: 123 KYKKANEKHQSYGTPLYGEEEQQTRHQPQHRRASTPLVRTTPTP-PSTLAPRDLRALPL 180


>Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical
           protein C33A11.2 protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 319 LYMRLQHYHRHRSTPCRTVKTLKTQRYIYVLY 224
           +YM  Q Y  HR TP  T++T+   R I+ ++
Sbjct: 138 IYMIFQCYLTHRVTPTITLRTVFYYRVIFTIF 169


>AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical
           protein C53D5.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 343 FHYGHCVKLYMRLQHYHRH-RSTPCRTVKTLKT 248
           F    C K Y R +  +RH RSTPC   + L T
Sbjct: 259 FECDGCGKRYSRQESVYRHQRSTPCTKYQNLTT 291


>AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.21 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 320 IVYEATTLSPAQID-TVSNSENIENTKIYLCTLRSSIRYLVLGKYSSG 180
           +VY   TLSP+Q +  V N+  +      + T+  S+  LV    SSG
Sbjct: 385 VVYSTCTLSPSQNEAVVENAVAVVRNDFGIVTVEESLHQLVSHMTSSG 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,578
Number of Sequences: 27780
Number of extensions: 335027
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)