Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1160
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 527 VSNLSRAAQFLLRSVVKCGRS 465
           + NL  A +F++ + V+CGRS
Sbjct: 93  LGNLDPANEFIVSTRVRCGRS 113


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 527 VSNLSRAAQFLLRSVVKCGRS 465
           + NL  A +F++ + V+CGRS
Sbjct: 109 LGNLDPANEFIVSTRVRCGRS 129


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 356 VNESNPTWTGR 388
           VNESN TW GR
Sbjct: 390 VNESNITWPGR 400


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = -3

Query: 450 HPHMSEDPHTPRASH*RRGLLRPVH 376
           HPH    PH    +H     + P H
Sbjct: 327 HPHRGSSPHHQHGNHTMGPTMGPPH 351


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 349 TIFHYGHCVKLYMRLQHYHRHRSTPCRTVKTLKTQ 245
           TIF + +C+ + + + +Y +  S      K L+ Q
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQ 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,258
Number of Sequences: 438
Number of extensions: 4300
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)