Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1158
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7M4G5 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_Q6GKW8 Cluster: At1g02290; n=2; Arabidopsis thaliana|Re...    34   2.6  
UniRef50_A4U5S3 Cluster: Putative uncharacterized protein; n=3; ...    33   8.0  

>UniRef50_A7M4G5 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides ovatus ATCC 8483|Rep: Putative
           uncharacterized protein - Bacteroides ovatus ATCC 8483
          Length = 757

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -2

Query: 627 EAFRFEGRGSRCNY-TETLELISQDGWRHLRCSYLWALVTTNTI*WARNKSTHLSNKKKL 451
           +A +FEG   R +Y T TLE  ++DGW  L  S    +V  ++      +S  L +   +
Sbjct: 461 KAAQFEGSEIRTSYSTSTLEQNTEDGWVELSNSSKQGIVNIHSANIPETQSASLPD-NGI 519

Query: 450 RLLVAQAVENRYFIGYGQLT 391
           R++  Q   N +F+  G++T
Sbjct: 520 RVITTQTSWNFWFVKDGKIT 539


>UniRef50_Q6GKW8 Cluster: At1g02290; n=2; Arabidopsis thaliana|Rep:
           At1g02290 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 443

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 277 CLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT-YKIPI 423
           C I     + + + ++S QGTEP+ HDPT+ +    R    +IT   IP+
Sbjct: 314 CSIPDPFLTYLETTQRSIQGTEPVFHDPTHTVPSALRVSNYSITEQNIPL 363


>UniRef50_A4U5S3 Cluster: Putative uncharacterized protein; n=3;
           Magnetospirillum gryphiswaldense|Rep: Putative
           uncharacterized protein - Magnetospirillum
           gryphiswaldense
          Length = 399

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +2

Query: 248 LCARNQNGKSVL*GKSSFRRWDHVRRAFRARSRCPMTLPTTWKWSSEKV 394
           +C R Q G S        RR    RRA  AR+R P  L T W W+  +V
Sbjct: 64  VCTRRQRGPS--------RRMVQQRRAAHARARWPWKLQTQWPWTDAEV 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,359,750
Number of Sequences: 1657284
Number of extensions: 11672195
Number of successful extensions: 24666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24664
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)