Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1158
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973...    28   5.7  
02_05_0603 - 30295130-30295389,30296840-30296987                       28   5.7  

>11_06_0300 +
           22095396-22096145,22096261-22096344,22097062-22097304,
           22098535-22098702,22098895-22099008,22099378-22099890
          Length = 623

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 358 GHGAAAPCPESSSHVIPSPKRALAL 284
           G GAAAP P SSS   P P+ A  L
Sbjct: 49  GGGAAAPPPSSSSSSAPPPRAAPGL 73


>02_05_0603 - 30295130-30295389,30296840-30296987
          Length = 135

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 259 KSKRKKCLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGK 396
           K K+KK   R+E  SE G  E    G+  +P DP ++L   ++ G+
Sbjct: 27  KKKKKKKQHREES-SEAGHGELHQGGSSEVPADPNDELTEADKMGE 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320,038
Number of Sequences: 37544
Number of extensions: 349197
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)