Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1158
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)                30   1.4  
SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)         30   1.4  
SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)       30   1.4  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   29   2.5  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         29   2.5  
SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63)                    29   3.3  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           29   4.4  
SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8)                     28   5.8  

>SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)
          Length = 693

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 253 CEKSKRKKCLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT 408
           C +S  K+   +QEL  +  + EK    T  + H  +N+     +  KLTIT
Sbjct: 105 CHESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 156


>SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)
          Length = 1290

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 253 CEKSKRKKCLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT 408
           C +S  K+   +QEL  +  + EK    T  + H  +N+     +  KLTIT
Sbjct: 61  CHESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 112


>SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)
          Length = 1347

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 253 CEKSKRKKCLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT 408
           C +S  K+   +QEL  +  + EK    T  + H  +N+     +  KLTIT
Sbjct: 426 CHESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 477


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 253 CEKSKRKKCLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT 408
           C +S  K+   +QEL  +  + EK    T  + H  +N+     +  KLTIT
Sbjct: 50  CHESHLKQLKYQQELLRQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 101


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 253 CEKSKRKKCLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT 408
           C +S  K+   +QEL  +  + EK    T  + H  +N+     +  KLTIT
Sbjct: 474 CYESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 525


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 253 CEKSKRKKCLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT 408
           C +S  K+   +QEL  +  + EK    T  + H  +N+     +  KLTIT
Sbjct: 710 CYESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 761


>SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63)
          Length = 201

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 630 REAFRFEGRGSRCNYTETLELISQDGWRHLRCSYLWALVTTNT 502
           RE F  E   S C+ + TL+ +  D WR+   S  +  + T T
Sbjct: 29  REKFGGEFSRSTCSLSSTLQFLKIDIWRNKNKSLFFGFIRTTT 71


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 280 LIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTITYKIPIFYGL 435
           +++  L S++GSRE   +  + +  +     + VER     ++ K+P+ YGL
Sbjct: 448 MLKSPLASQLGSREIDSRALQLVYQEVKQRWQGVERSNAPGLSDKLPLVYGL 499


>SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8)
          Length = 335

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 287 GKSSFRRWDHVRRAFRARSRCPMTLPTTWK 376
           GK SFR+W     AF+A +R P  +P  W+
Sbjct: 205 GKKSFRQW---LDAFKAIARLPQGVPYQWR 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,225,746
Number of Sequences: 59808
Number of extensions: 365510
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)