Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1158
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.84 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.84 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 6   R*TDACVFLIRACYMTMLKIYQCVHSSLRDTSLRKILFDA 125
           R TD  ++ IR C  T L       + +   SLRK +  A
Sbjct: 277 RKTDQILYFIRGCLQTYLINASTYLNEVHTASLRKFILSA 316


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 6   R*TDACVFLIRACYMTMLKIYQCVHSSLRDTSLRKILFDA 125
           R TD  ++ IR C  T L       + +   SLRK +  A
Sbjct: 315 RKTDQILYFIRGCLQTYLINASTYLNEVHTASLRKFILSA 354


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 597 RCNYTETLELISQDGW 550
           RCN T     I  DGW
Sbjct: 363 RCNATGAFSWIGSDGW 378


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 301 SEMGSREKSFQGTEPLPHDPTNDLE 375
           SE     K  + T PLP  P N ++
Sbjct: 4   SEFSKISKVDRSTSPLPRKPVNPVQ 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,992
Number of Sequences: 438
Number of extensions: 3566
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)