Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1158
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02290.1 68414.m00171 expressed protein                             34   0.072
At5g01020.1 68418.m00004 protein kinase family protein contains ...    28   4.8  
At5g40750.1 68418.m04945 hypothetical protein                          27   8.3  
At2g40550.1 68415.m05003 expressed protein                             27   8.3  

>At1g02290.1 68414.m00171 expressed protein
          Length = 443

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 277 CLIRQELFSEMGSREKSFQGTEPLPHDPTNDLEMVERKGKLTIT-YKIPI 423
           C I     + + + ++S QGTEP+ HDPT+ +    R    +IT   IP+
Sbjct: 314 CSIPDPFLTYLETTQRSIQGTEPVFHDPTHTVPSALRVSNYSITEQNIPL 363


>At5g01020.1 68418.m00004 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 410

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 507 NTI*WARNKSTHLSNKKKLRLLVAQAVENRYFIGYGQLTFSLDHF 373
           N + WAR K   L++K+KL  ++   +EN+Y +   Q   SL ++
Sbjct: 286 NLVDWARPK---LNDKRKLLQIIDPRLENQYSVRAAQKACSLAYY 327


>At5g40750.1 68418.m04945 hypothetical protein 
          Length = 297

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 344 RCPMTLPTTWKWSSEKVS*P*PIKYRFST 430
           R  ++L +TWKW+ +K+       YR ST
Sbjct: 239 RAGISLKSTWKWNKKKIMKELKSMYRIST 267


>At2g40550.1 68415.m05003 expressed protein
          Length = 589

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 516 VTTNTI*WARNKSTHLSNKKKLRLLVAQAVENRYFIGYGQLTFSLDHFQVVGRVMGQRLR 337
           V  N +  AR     L ++   RLL    + +   + YG+ T SL+H+Q+V  +   R  
Sbjct: 530 VVENDLVAARQTDRSLGSQDLSRLLTMARMMS---VSYGETTLSLEHWQMVLELERLRKE 586

Query: 336 ALK 328
            LK
Sbjct: 587 RLK 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,502
Number of Sequences: 28952
Number of extensions: 265066
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)