Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1157
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22TU6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q8HEI3 Cluster: Cytochrome c oxidase subunit 3; n=2; Va...    33   6.9  
UniRef50_Q7RLA0 Cluster: Putative uncharacterized protein PY0264...    33   9.2  
UniRef50_A3RE55 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   9.2  

>UniRef50_Q22TU6 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1298

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
 Frame = -2

Query: 412  NNLRYKVNVIRYINSVKSKSFRK---KISQLTRLG*VKVNGYFGISDIFATLQQSH*SL- 245
            NNL+  +++    +S KS   R+    I++  ++  +K+    GIS I  TL  +     
Sbjct: 757  NNLQQNIDIQSISSSSKSFLIRQVFENINKRKQMRYLKIINILGISSILVTLALTLSGFF 816

Query: 244  KFGENIS**KKNFNYLNGVNLIEVQLKTS 158
             F  +++  ++NF Y+N + LI VQ+  S
Sbjct: 817  TFFTSLASQRENFKYINWIYLINVQISYS 845


>UniRef50_Q8HEI3 Cluster: Cytochrome c oxidase subunit 3; n=2;
           Varroa destructor|Rep: Cytochrome c oxidase subunit 3 -
           Varroa destructor (honeybee mite)
          Length = 263

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 94  VYVTFIFVIKDAFYLVSSINNSMFLIELQLSLHHSNN*SFFFIMIYFLQILNF 252
           VY ++  V    + ++SS     F++ +   LH +N   FFF   +FL ILNF
Sbjct: 2   VYHSYHMVENSPWPIISSFGAFTFMVSIVCMLHLNN--FFFFFFSFFLLILNF 52


>UniRef50_Q7RLA0 Cluster: Putative uncharacterized protein PY02646;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY02646 - Plasmodium yoelii yoelii
          Length = 1230

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 97  YVTFIFVIKDAFYLVSSINNS--MFLIELQLSLHHSNN*SFFFIMIYFLQILNFNGSAVK 270
           Y+ F+F     F     INNS   FLI +  +    N   F+F    FL I+  N + + 
Sbjct: 787 YIIFLFFNYHIFIERDKINNSCHFFLITILKNCTQENTNKFYFWAYLFLNIIRINFNRMI 846

Query: 271 LQKCR 285
           L  C+
Sbjct: 847 LLSCK 851


>UniRef50_A3RE55 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=1; Metaseiulus occidentalis|Rep: NADH-ubiquinone
           oxidoreductase chain 5 - Metaseiulus occidentalis
           (western predatory mite)
          Length = 560

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +1

Query: 37  LTFFILFYCHDVEG*KAVFVYVTFIFVIKDAFYLVSSINNSMFLIELQLSLHHSNN*SFF 216
           LTFF       VE  K  F+ +TFIFVI   F ++  +N  M L+   +        S+F
Sbjct: 68  LTFFFSSVYMGVENNKYYFIILTFIFVI-SMFIVILGMNLWMILLGWDM----LGVVSYF 122

Query: 217 FIMIYFLQILNFNG 258
            ++ Y  ++ N++G
Sbjct: 123 LVVFYNSEMSNYSG 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,001,386
Number of Sequences: 1657284
Number of extensions: 11650117
Number of successful extensions: 20591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20583
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)