Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1157
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)                   28   8.6  
SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)       28   8.6  

>SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)
          Length = 540

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 248 TLMALL*SCKNVAYTKIAIHLNLT*PCQLRNLLSETL*FHRINISDNINLISKVILDQSS 427
           T+ ALL +C  + Y  +     +  PC++RN +S T    R +    I +I   +L    
Sbjct: 172 TIAALLYTCNVICYLYVVCKTAIKKPCRIRN-VSLTPLIRRSSRKGLIRVIRSRVLQVKR 230

Query: 428 FQMQKLKL-KLTHI 466
             + KL++ K+ H+
Sbjct: 231 QVVLKLQVTKMVHL 244


>SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)
          Length = 683

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +3

Query: 420 RVHSKCK-N*N*N*PIFFLFKHISWLVQYDVR-IQSLIGNKY--FTLDLREYSSYRC*HR 587
           R+H +C  + N    + F  KH+ W   +    +++   N+Y  +  D+ E  +YR  HR
Sbjct: 298 RLHIECLLHGNVTEKVLFFKKHLVWSTLWRASSLRTRARNRYCRYNYDVTERYNYRTIHR 357

Query: 588 TYNALN 605
            Y+ L+
Sbjct: 358 IYSKLS 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,867,257
Number of Sequences: 59808
Number of extensions: 354404
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)