Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1157
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.93 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.93 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   8.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 244 LNFNGSAVKLQKCRLYQNSHSP*PNLTLSVEKSSFGNSLISPN*YI 381
           L FN    +L+   L   S    P+L  S EK    +++I PN YI
Sbjct: 95  LRFNDFGGRLKYLTLTDASRVWMPDLFFSNEKEGHFHNIIMPNVYI 140


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 244 LNFNGSAVKLQKCRLYQNSHSP*PNLTLSVEKSSFGNSLISPN*YI 381
           L FN    +L+   L   S    P+L  S EK    +++I PN YI
Sbjct: 95  LRFNDFGGRLKYLTLTDASRVWMPDLFFSNEKEGHFHNIIMPNVYI 140


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 612 VASSMHYTSYASSDTSYIPLDLT*SIYY 529
           V  +  Y  YA+  + YIPL +   +YY
Sbjct: 196 VCQNFFYQIYATLGSFYIPLFVMIQVYY 223


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 135 IKRIFNYKDKCHVNKNSLSPLDIMTIK*NKKCQL 34
           I+ IF Y    H N+ ++  LD+  +K  +   L
Sbjct: 658 IENIFKYGYVSHANQRNMYKLDLKNMKYTRSADL 691


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 585 RTYNALNSPPNTLSNRGYLVDSKYRLYIESMTT 683
           + Y  ++S P+TL+     +D   +  IES+T+
Sbjct: 378 QNYLTVHSFPSTLNIPSVKIDEDQKCSIESITS 410


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 214 FFIMIYFLQILNFNGSAVKLQK 279
           +FI +YF  ++ F    ++L K
Sbjct: 21  YFIFLYFNSLVRFRRFTIELDK 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,313
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)