Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1156X
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 105 4e-24
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 62 4e-11
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 50 2e-07
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 38 0.001
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 37 0.002
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 33 0.027
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 30 0.25
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.44
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 29 0.59
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 27 1.4
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 2.4
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 26 3.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.1
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.2
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 9.5
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 9.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 105 bits (252), Expect = 4e-24
Identities = 52/86 (60%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKXQGLLSFW 433
+ GG+SAAVSKTA A IERVKLL+Q Q + + RYKGI + F R +G++S W
Sbjct: 32 MMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLW 91
Query: 434 RGNFANVIRYFPTQALNFAFKDKYKR 511
RGN ANV+RYFPTQALNFAFKDK+K+
Sbjct: 92 RGNTANVLRYFPTQALNFAFKDKFKK 117
Score = 32.7 bits (71), Expect = 0.036
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +2
Query: 254 LLAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFW 433
L +GG + A S V ++ + L S + ++++ G+VD + + + GL +
Sbjct: 136 LASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLY 195
Query: 434 RGNFANVIRYFPTQALNFAFKDKYK 508
RG +V+ + L F D K
Sbjct: 196 RGFGPSVVGIVVYRGLYFGMYDTLK 220
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 62.5 bits (145), Expect = 4e-11
Identities = 31/79 (39%), Positives = 51/79 (64%)
Frame = +2
Query: 254 LLAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFW 433
+L+GG++A VS+TAV+ +ER+K++ QVQ+ ++ Y + V+I +GL+ F+
Sbjct: 24 MLSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFF 76
Query: 434 RGNFANVIRYFPTQALNFA 490
RGN N +R FP A+ FA
Sbjct: 77 RGNGTNCLRAFPYGAVQFA 95
Score = 33.5 bits (73), Expect = 0.021
Identities = 18/78 (23%), Positives = 35/78 (44%)
Frame = +2
Query: 254 LLAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFW 433
L GG + + +T + ++ QV + YK I A I K +G+ F+
Sbjct: 230 LFLGGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFF 286
Query: 434 RGNFANVIRYFPTQALNF 487
RG +N+++ P ++ +
Sbjct: 287 RGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/85 (32%), Positives = 46/85 (54%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFWR 436
+AGG + V+K+ VA ++RVK+L Q H S + A R+ G+ A I GL ++
Sbjct: 22 IAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQ 80
Query: 437 GNFANVIRYFPTQALNFAFKDKYKR 511
G+ A + R FP + F ++ +R
Sbjct: 81 GHTATLYRVFPYAGIKFVAYEQVRR 105
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +2
Query: 263 GGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFWRGN 442
G +S + T V + ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 443 FANVIRYFPTQALNFAFKDKYKR 511
N+++ P+ A+++ + K+
Sbjct: 399 SPNLLKVAPSVAISYLVYENCKK 421
Score = 30.7 bits (66), Expect = 0.15
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKXQGLLSFW 433
LAGG++ +V++ + ++ +K +Q +S+ Q K I+ + + + K G+ ++
Sbjct: 233 LAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYY 288
Query: 434 RGNFANVIRYFPTQALNFAFKDKYKRCSSAALTRR 538
RG ++ FP A + + KR L R
Sbjct: 289 RGVLVGILGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/79 (27%), Positives = 43/79 (54%)
Frame = +2
Query: 254 LLAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFW 433
+++GG+S A++ + ++ VK LLQ + S I ++ KG +D I G+ SF+
Sbjct: 208 IISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFF 266
Query: 434 RGNFANVIRYFPTQALNFA 490
+G ++ P A+++A
Sbjct: 267 KGIRPRMVVAMPATAVSWA 285
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 33.1 bits (72), Expect = 0.027
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 293 AVAFIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKXQGLLSFWRGNFANVIRY 463
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 464 FPTQALNFAFKDKYKR 511
P +AL FA D Y +
Sbjct: 76 APKRALKFASNDTYSK 91
Score = 30.7 bits (66), Expect = 0.15
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +2
Query: 254 LLAGGISAAVSKTAVAFIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSF 430
+L G + V E +K+ LQ V++ SK Y G VD F +I K + +L+
Sbjct: 108 ILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILAL 160
Query: 431 WRGNFANVIRYFPTQALNFAFKDKYKRCSSAALTR 535
+ G A + R+ A F K + + A +R
Sbjct: 161 YNGFEATMWRHVVWNAGYFGVIQKIRNSLTPASSR 195
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.9 bits (64), Expect = 0.25
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFWR 436
LAGGIS+ + + +A + +K+ +Q+ S + F + +G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 437 GNFANVIRYFPTQALNFAFKDKYK 508
GN + Y A F K K
Sbjct: 70 GNVVAELLYLVYGAAEFVAFSKLK 93
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 356 AADQRYKGIVDAFVRIPKXQGLLSFWRGNFANV 454
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKXQGLLS 427
+AGG + S VA ++ VK Q Q + G + + I +G+
Sbjct: 10 IAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAG 69
Query: 428 FWRGNFANVIRYFPTQALNFAFKDKYK 508
+RG ++ Y P+ ++ F +K K
Sbjct: 70 LYRGVGPMMLGYLPSWSIYFVVYEKCK 96
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 28.7 bits (61), Expect = 0.59
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFWR 436
L G ++ ++ I+ VK +Q ++A + YK + +I GLL FW
Sbjct: 208 LVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWS 261
Query: 437 GNFANVIRYFPTQALNFAFKDK 502
G + R + + F +K
Sbjct: 262 GATPRLARLILSGGIVFTVYEK 283
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 344 SKQIAADQRYKGIVDAFVRIPKXQGLLSFWRGNFANVIRYFPTQALNF 487
S I +Y G++ F + QG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
Score = 25.0 bits (52), Expect = 7.2
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVS----KQIAADQR-----YKGIVDAFV---R 400
+AGG++ + A A ++ VK LQ KQ A + Y+ +D +
Sbjct: 53 IAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTAKSKSPLTAAYRHFMDTCIILKN 112
Query: 401 IPKXQGLLSFWRGNFANVIRYFPTQALNF 487
+ +G + +RG N+I P +++NF
Sbjct: 113 VKVHEGTRALFRGLGPNLIGTIPARSINF 141
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 396 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMNATAV 289
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 134 VFRDPPSACAATPTSTYSPSEDH---IIEQNVEPRRSGRVR*GLLAGGISAAVSKTAVAF 304
V RD S T+ P H +IE + P RSG GLL SA + + F
Sbjct: 300 VLRDDYSFKLFLEAETFDPRMTHRTTLIESSSSPLRSGPSTSGLLDSFTSAFHTSGSSKF 359
Query: 305 IERVKLLLQVQ 337
E+ +L++ +
Sbjct: 360 SEQDPILIEAK 370
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 92 YEITPNLLFKNQELVFRDPPSACAATPTSTY 184
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 380 IVDAFVRIPKXQGLLSFWRGNFANVIRYFPT 472
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 104 PNLLFKNQELVFRDPPSACAATPT 175
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 72 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 194
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,212
Number of Sequences: 5004
Number of extensions: 42395
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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