Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1156X
(542 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 150 1e-38
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 150 1e-38
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 22 3.5
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 3.5
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 21 8.1
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 150 bits (363), Expect = 1e-38
Identities = 68/85 (80%), Positives = 78/85 (91%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFWR 436
LAGG++AA+SKT VA IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPK QG LS+WR
Sbjct: 15 LAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74
Query: 437 GNFANVIRYFPTQALNFAFKDKYKR 511
GN ANVIRYFPTQALNFAFKDKYK+
Sbjct: 75 GNLANVIRYFPTQALNFAFKDKYKQ 99
Score = 27.9 bits (59), Expect = 0.071
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 216 MSNLADPVAFAKD 254
MS LADPVAFAKD
Sbjct: 1 MSGLADPVAFAKD 13
Score = 27.5 bits (58), Expect = 0.093
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 254 LLAGGISAAVSKTA--VAF-IERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLL 424
L++ GI+ V+ A V++ + V+ + +Q S + ++ YK + + I K +G
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270
Query: 425 SFWRGNFANVIR 460
+F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282
Score = 23.8 bits (49), Expect = 1.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 505 QEVFLGGVDKKT 540
++VFLGGVDK T
Sbjct: 98 KQVFLGGVDKNT 109
Score = 23.8 bits (49), Expect = 1.2
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +2
Query: 254 LLAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFW 433
L +GG + A S V ++ + L V K ++ + G+ + +I K G+ +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176
Query: 434 RGNFANVIRYFPTQALNFAFKD 499
RG +V +A F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 150 bits (363), Expect = 1e-38
Identities = 68/85 (80%), Positives = 78/85 (91%)
Frame = +2
Query: 257 LAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFWR 436
LAGG++AA+SKT VA IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPK QG LS+WR
Sbjct: 15 LAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74
Query: 437 GNFANVIRYFPTQALNFAFKDKYKR 511
GN ANVIRYFPTQALNFAFKDKYK+
Sbjct: 75 GNLANVIRYFPTQALNFAFKDKYKQ 99
Score = 27.9 bits (59), Expect = 0.071
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 216 MSNLADPVAFAKD 254
MS LADPVAFAKD
Sbjct: 1 MSGLADPVAFAKD 13
Score = 27.5 bits (58), Expect = 0.093
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 254 LLAGGISAAVSKTA--VAF-IERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLL 424
L++ GI+ V+ A V++ + V+ + +Q S + ++ YK + + I K +G
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270
Query: 425 SFWRGNFANVIR 460
+F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282
Score = 23.8 bits (49), Expect = 1.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 505 QEVFLGGVDKKT 540
++VFLGGVDK T
Sbjct: 98 KQVFLGGVDKNT 109
Score = 23.8 bits (49), Expect = 1.2
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +2
Query: 254 LLAGGISAAVSKTAVAFIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKXQGLLSFW 433
L +GG + A S V ++ + L V K ++ + G+ + +I K G+ +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176
Query: 434 RGNFANVIRYFPTQALNFAFKD 499
RG +V +A F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 22.2 bits (45), Expect = 3.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 446 QSYHARMKGDPAPWGCGRRR 387
Q Y R KGD +P G G R
Sbjct: 135 QKYRLRHKGDGSPGGNGGPR 154
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 22.2 bits (45), Expect = 3.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 446 QSYHARMKGDPAPWGCGRRR 387
Q Y R KGD +P G G R
Sbjct: 135 QKYRLRHKGDGSPGGNGGPR 154
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 141 VIPHPRVPQLPPRHIHLVKIT 203
+I P +LPP H H +T
Sbjct: 92 IITIPPTRKLPPLHPHTAMVT 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,200
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -