Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1155
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 33 0.24
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 33 0.24
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 33 0.24
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.72
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 31 0.95
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 31 0.95
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 31 0.95
AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical ... 30 2.2
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 8.9
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 8.9
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 28 8.9
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 8.9
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 8.9
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +1
Query: 10 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 189
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 190 KDGKFKKDVALAKVPNAEDKLK 255
KD K K++ +DKLK
Sbjct: 7325 KDDKLKQEADAKLKKEKDDKLK 7346
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +1
Query: 10 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 189
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 190 KDGKFKKDVALAKVPNAEDKLK 255
KD K K++ +DKLK
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLK 7366
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +1
Query: 10 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 189
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 190 KDGKFKKDVALAKVPNAEDKLK 255
KD K K++ +DKLK
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLK 7366
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 426 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 313
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 323 CEMLPRERPEARSFLVNT*SN--PTVPYLISVK*LGRVYLDDIMIISENIAILYGVIILT 496
C +PR E+ F+ N + P L V + ++ +E + ++ GV++L
Sbjct: 4006 CISIPRHSLESSDFICNCTGGILQSTPCAEKSDILSTVL--EFLLKAEIVIVILGVLLLL 4063
Query: 497 LIYIVR*ILFSCCNIFDREPKF 562
L++ + I + CC +R+PK+
Sbjct: 4064 LVFCLTFITWKCCK-KNRDPKY 4084
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 323 CEMLPRERPEARSFLVNT*SN--PTVPYLISVK*LGRVYLDDIMIISENIAILYGVIILT 496
C +PR E+ F+ N + P L V + ++ +E + ++ GV++L
Sbjct: 4006 CISIPRHSLESSDFICNCTGGILQSTPCAEKSDILSTVL--EFLLKAEIVIVILGVLLLL 4063
Query: 497 LIYIVR*ILFSCCNIFDREPKF 562
L++ + I + CC +R+PK+
Sbjct: 4064 LVFCLTFITWKCCK-KNRDPKY 4084
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 323 CEMLPRERPEARSFLVNT*SN--PTVPYLISVK*LGRVYLDDIMIISENIAILYGVIILT 496
C +PR E+ F+ N + P L V + ++ +E + ++ GV++L
Sbjct: 4006 CISIPRHSLESSDFICNCTGGILQSTPCAEKSDILSTVL--EFLLKAEIVIVILGVLLLL 4063
Query: 497 LIYIVR*ILFSCCNIFDREPKF 562
L++ + I + CC +R+PK+
Sbjct: 4064 LVFCLTFITWKCCK-KNRDPKY 4084
>AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical
protein C35A11.1 protein.
Length = 429
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -1
Query: 356 VLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFNLSSALGTLARATSFLNFPSLVISC 177
+L VFL+ F P ++ + + V++ LYF + L L+ S +NF V+ C
Sbjct: 293 ILLVFLITEF---PQGIISILCAIFTTDVHRYLYFYIGDVLDLLSLVNSSVNF---VLYC 346
Query: 176 DLISIHRAYFF 144
+ S +R F+
Sbjct: 347 VMSSRYRQTFW 357
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 275 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 397
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 275 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 397
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 61 DCLSETKADEQLVNKLKTGDFKTENEPLK 147
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 209 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 36
F + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 6 FFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 61 DCLSETKADEQLVNKLKTGDFKTENEPLK 147
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 275 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 397
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,963
Number of Sequences: 27780
Number of extensions: 357097
Number of successful extensions: 998
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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