Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1155
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    32   0.50 
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.67 
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   4.7  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    28   6.2  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    28   6.2  
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    28   6.2  
At4g23280.1 68417.m03355 protein kinase, putative similar to rec...    28   6.2  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 25  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 201
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 360 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 265
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 381 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 289
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 171
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296

Query: 172 KSQLMTKDGKFKK 210
            S    KDG  KK
Sbjct: 297 VSSFEEKDGFLKK 309


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 171
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421

Query: 172 KSQLMTKDGKFKK 210
            S    KDG  KK
Sbjct: 422 VSSFEEKDGFLKK 434


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 52  HRADCLSETKADEQLVNKLKT-GDFKTENEPLKKYALCMLIKSQLMTKD-GKFKKDVALA 225
           H  D + E  +    + K++T GD+K EN  L +Y  C+L    +  +D G   K + LA
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVLEWCDVCVEDFGPLMKLLRLA 286

Query: 226 KVPN 237
              N
Sbjct: 287 DGEN 290


>At4g23280.1 68417.m03355 protein kinase, putative similar to
           receptor-like protein kinase 4 (gi:13506745), 5
           (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 656

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 792 FFFFFQYYGSYCCTKNIKFAKKVNVALT*AYYSHVTYGTN-KTL 664
           F F F +  S+  +    F    N ++T  Y S+ TY TN KTL
Sbjct: 9   FLFLFSFITSFTASAQNPFYLYHNCSITTTYSSNSTYSTNLKTL 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,147,057
Number of Sequences: 28952
Number of extensions: 324345
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)