Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1154X
         (379 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VEW2 Cluster: Putative SERF-like protein; n=2; Drosop...    36   0.25 
UniRef50_Q245C5 Cluster: Putative uncharacterized protein; n=1; ...    33   1.3  
UniRef50_Q5FK77 Cluster: Putative hydrophobic protein; n=1; Lact...    32   3.1  
UniRef50_A1CBD7 Cluster: Rho guanyl nucleotide exchange factor, ...    31   5.4  
UniRef50_Q86975 Cluster: UL52' helicase-primase complex homolog ...    31   7.1  

>UniRef50_Q9VEW2 Cluster: Putative SERF-like protein; n=2;
           Drosophila melanogaster|Rep: Putative SERF-like protein
           - Drosophila melanogaster (Fruit fly)
          Length = 60

 Score = 35.9 bits (79), Expect = 0.25
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGRS*QQGT 212
           +RDLAR K Q+ Q ++ K K       L +++    DAELMR+  +K+  +   GT
Sbjct: 6   QRDLARQKNQKKQADLTKGKRTD---NLTVEQRKARDAELMREKQKKKEEAAAAGT 58


>UniRef50_Q245C5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1280

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 23/89 (25%), Positives = 44/89 (49%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGRS*QQGTILGK 200
           +R+ + + T++N   + K  N  E+PG      NP   E+ +K++E   +S  Q  +L +
Sbjct: 184 KRNQSASSTRQNNQILNKTCNLDEEPGKRQMIDNPYSQEISKKSSENSKKS--QEIVLDQ 241

Query: 199 RQINPIFRKFLTALFLLGVNIKIGLVRQE 113
            Q N  F + +  +    +N ++  V QE
Sbjct: 242 YQ-NHFFGRCVNRVIKTVINPEVSKVLQE 269


>UniRef50_Q5FK77 Cluster: Putative hydrophobic protein; n=1;
           Lactobacillus acidophilus|Rep: Putative hydrophobic
           protein - Lactobacillus acidophilus
          Length = 204

 Score = 32.3 bits (70), Expect = 3.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 309 SLGFFLFCISTWFLWVLARAKSL 377
           S GFF+F  S WF+WVL  A +L
Sbjct: 138 STGFFMFWHSEWFVWVLTVASTL 160


>UniRef50_A1CBD7 Cluster: Rho guanyl nucleotide exchange factor,
            putative; n=7; Eurotiomycetidae|Rep: Rho guanyl
            nucleotide exchange factor, putative - Aspergillus
            clavatus
          Length = 1553

 Score = 31.5 bits (68), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 319  NPSEKPGLPLQEGNPGDAELMRKTTEKR 236
            N + +P  P+  GNP  +ELM  TT+ R
Sbjct: 1217 NQNPRPSTPVSSGNPSGSELMTPTTQPR 1244


>UniRef50_Q86975 Cluster: UL52' helicase-primase complex homolog
           protein; n=1; Phocid herpesvirus 2|Rep: UL52'
           helicase-primase complex homolog protein - Phocid
           herpesvirus 2
          Length = 262

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 313 SEKPGLPLQEGNPGDAELMRKTTEKRGRS*QQGTILGKRQINPIFR-KFLTALFLLGVNI 137
           SE P L LQE   G  +    T    GR+  +G I     INP+FR +FL   + + VN 
Sbjct: 2   SESPNLMLQEELQGLLDFAA-TAPDDGRNCTKGDIFPTVHINPVFRCQFLNKNYFVIVNA 60

Query: 136 KI 131
            I
Sbjct: 61  DI 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,562,071
Number of Sequences: 1657284
Number of extensions: 6936941
Number of successful extensions: 16467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16456
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)