Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1154X
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   1.7  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   3.9  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   3.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    24   6.9  
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    24   9.1  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   9.1  
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    24   9.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   9.1  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 217  GTILGKRQINPIFRKFLTALFLLGVNIKI 131
            G ++  R++ P  +KF++ L LL +N+ +
Sbjct: 969  GDLIHNRKMGPTVKKFISKLPLLNINVDL 997


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEK--PGLPLQEGNPGDAELMRKTTE 242
           R +  + K  RNQV  +K+K   EK   G  L E N  D + + +  +
Sbjct: 36  RNNKQKNKKSRNQVRREKKKLLREKTNSGAKLAEKNSDDKDQLTENND 83


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 245 RKKGEELAARNHLRQAAN*SHI*EILDCSIFI 150
           +KK EEL A + + QAA    +   L  SIF+
Sbjct: 541 KKKSEELTAHSKILQAAKKLRLNSTLRTSIFV 572


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 337 EMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEK 239
           + Q  + P E+P  P  E    + E MRK  EK
Sbjct: 585 DQQTTEAPFEEPDEPAHEPTEEEQEEMRKLEEK 617


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 134 NWACSSGVKIFIK 96
           NW C  G+K F K
Sbjct: 27  NWRCGKGIKCFFK 39


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 45   LNIWELLLNFRIAY 86
            LN+W  LLN  +AY
Sbjct: 1479 LNVWMALLNLEVAY 1492


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 357 KPKGTRWKCKKGKIPVKSLVYPYRK 283
           KP GT     +  IP  S+ YPYRK
Sbjct: 188 KPLGTM---TEAAIPENSIYYPYRK 209


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTT 245
           R ++A  +  + + + +K+K   E+    LQE    DAE+   +T
Sbjct: 391 REEVAAVEAAKIRADEEKKKKEREEQVRLLQESADKDAEMNEAST 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,028
Number of Sequences: 5004
Number of extensions: 28202
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)