Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1154X
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0186 + 1491202-1491210,1491401-1491476,1491573-1492075 30 0.69
04_04_0869 - 28883688-28884983 29 1.2
03_02_0492 - 8861472-8861517,8862672-8862781,8862889-8863059,886... 29 1.2
11_04_0035 - 12632439-12632728,12633000-12633093,12633118-126335... 28 2.1
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 28 2.1
01_06_0113 - 26569803-26569874,26570032-26570111,26570712-26571258 28 2.1
11_01_0316 + 2361904-2362237,2362454-2363178 27 4.9
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 27 4.9
09_01_0069 - 1010888-1011226,1011412-1011600 26 8.6
04_03_0912 + 20770033-20770347 26 8.6
>03_01_0186 + 1491202-1491210,1491401-1491476,1491573-1492075
Length = 195
Score = 29.9 bits (64), Expect = 0.69
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 377 EGLGPRQNP---KEPGGNAKKEKSQ*KAWFTPTGRKPRGC*INAENHRKKGEELAA 219
E LGP + P KE GG+AKK+ K G+K G E KKGE AA
Sbjct: 67 ESLGPAKEPEKKKEGGGDAKKDGGDGKKEGGGDGKKEGGD-GKKEGDGKKGEAAAA 121
>04_04_0869 - 28883688-28884983
Length = 431
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -2
Query: 375 GTWPAPKPKGTRWKCKKGKIPVKSLVYPYRKETPGM 268
G+ PAP PK K KKGK P S P +TP M
Sbjct: 353 GSSPAPSPKAAGKKKKKGKSPSHSPPAP-PADTPDM 387
>03_02_0492 -
8861472-8861517,8862672-8862781,8862889-8863059,
8863158-8863262,8863342-8863431,8863719-8863813,
8863933-8864101,8864193-8864345,8864562-8864639,
8864883-8864957,8865076-8865098,8865181-8865268,
8865397-8865432
Length = 412
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 379 RRDLARAKTQRNQVEMQKRKNPSEKPGLPLQEGNPG-DAELMRKTTE 242
RR L + +R MQ++ NP+ L GNPG AEL+ + E
Sbjct: 10 RRTLEEIRQKRAAERMQQQHNPAAAASLVDPYGNPGAGAELLGRVRE 56
>11_04_0035 -
12632439-12632728,12633000-12633093,12633118-12633573,
12633633-12633833
Length = 346
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 343 QVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGRS 227
QVE+ K + P L L EG DAE RK RG++
Sbjct: 228 QVEVDKEEEADGLPRLVLPEGVNYDAEPSRKGKRARGKA 266
>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 378 GGTWPAPKPKGTRWKCKKGKIPVKSLVYPYRKETPGML 265
G T P P P TR K K+P++S ++P + + P +L
Sbjct: 971 GATTPPPLPL-TR-VASKSKVPLQSFLFPAKAKKPSLL 1006
>01_06_0113 - 26569803-26569874,26570032-26570111,26570712-26571258
Length = 232
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 126 SPILMLTPNKNRAVKNFLNMGLICRLPKMVPCC*LLPLFSVVFRINSASPGFPSCRGKPG 305
+PI+ P+ N +++ GL RLP VP P+F + + SP + +C G G
Sbjct: 34 APIINGPPDPNISIRLVGVEGLDPRLPAPVP-----PVFDLAVDVAGVSPRYHACGGGGG 88
Query: 306 FSL 314
L
Sbjct: 89 SKL 91
>11_01_0316 + 2361904-2362237,2362454-2363178
Length = 352
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 366 PAPKPKGTRWKCKKGKIPVKSLVYPYRKETP 274
P PKP G K +KG+ P K P +ETP
Sbjct: 26 PKPKPAGKGGKPEKGETPGKG--KPEERETP 54
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = -1
Query: 349 RNQVEMQKRKNPSEKPGLPLQ----EGNPGDAELMRKTTE 242
+N ++ QK+K+ S+K G+PL+ +GN +KTT+
Sbjct: 162 QNAIQKQKKKSLSKKKGVPLEKKSMKGNKTTTLSSQKTTK 201
>09_01_0069 - 1010888-1011226,1011412-1011600
Length = 175
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 171 NFLNMGLICRLPKMVPC 221
NF NM I LPK++PC
Sbjct: 98 NFPNMTTIFNLPKIIPC 114
>04_03_0912 + 20770033-20770347
Length = 104
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 378 GGTWPAPKPKGTRWKCKKGKIPVKS 304
GGTWP P W+ K + PV+S
Sbjct: 70 GGTWPPPSAPSHCWR-KTARPPVES 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,778,805
Number of Sequences: 37544
Number of extensions: 186971
Number of successful extensions: 415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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