Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1154X
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)                    29   1.3  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      27   3.8  
SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)                    27   5.1  
SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)                    27   5.1  
SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)                 27   5.1  
SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56)                     27   5.1  
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
          Length = 752

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 337 EMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEK 239
           E +K ++ +EKP  P +EG P +A+L +    K
Sbjct: 426 ESEKAEDKNEKPAEPTKEGVPAEAKLSKPRLSK 458


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 202 CLRWFLAANSSPFFRWFSALIQHPRGFLPVGV 297
           C  ++L+ + SPF   F A ++H + ++P G+
Sbjct: 477 CYVYYLSDSHSPFLSDFKAYVKHHKFYIPEGI 508


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 328 KRKNPSEKPGLPLQEGNPGDAELMRKTTEKRG 233
           +R +PS  P +P   G+   + ++R+   +RG
Sbjct: 483 RRSSPSGSPAIPTPSGSSSGSSIVRRPRRRRG 514


>SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)
          Length = 683

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 244 EKRGRS*QQGTILGKRQINPIFRKFLTALFLLGVN 140
           E +G S Q G      +IN +FRKF T   + G+N
Sbjct: 126 EPQGPSQQNGAQRSTTRINSVFRKFGTQSLVNGLN 160


>SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)
          Length = 683

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 244 EKRGRS*QQGTILGKRQINPIFRKFLTALFLLGVN 140
           E +G S Q G      +IN +FRKF T   + G+N
Sbjct: 126 EPQGPSQQNGAQRSTTRINSVFRKFGTQSLVNGLN 160


>SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)
          Length = 811

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 156 NRAVKNFLNMGLICRLPKMV---PCC*LLPLF 242
           N+ V  FL+ GL CRLP  V   PC   +P F
Sbjct: 514 NQMVNAFLHFGLACRLPSPVDDEPCL-FIPWF 544


>SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56)
          Length = 642

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 244 EKRGRS*QQGTILGKRQINPIFRKFLTALFLLGVN 140
           E +G S Q G      +IN +FRKF T   + G+N
Sbjct: 126 EPQGPSQQNGAQRSTTRINSVFRKFGTQSLVNGLN 160


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -3

Query: 365  PRQNPKEPGGNAKKEKSQ*KAWFTPTGRKPRGC*INAENHRKKGE 231
            P    +EP        SQ  +   PT  KP G   N EN  K GE
Sbjct: 1198 PPATAEEPQQGLPAPASQEDSQAQPTETKPEGAEDNPENAEKPGE 1242


>SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 48  NIWELLLNFRIAYNISLDKNFHS*RTSPILMLTPNKNRAVKNFLNMGLICRL 203
           N+  +   FR A  I  +K   S + S  L+L+    RA  NFLN   IC L
Sbjct: 406 NVASITGRFRAAKAIMANKIQLSSQESDPLVLSSTAFRANLNFLNAVFICSL 457


>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGRS*QQGTILGK 200
           + +  R +T+   V   K   P +K   P+Q  +    + + KTT K     Q+  I G+
Sbjct: 230 KEEKQRKRTKSRGVSPNKEPKPKKKSSEPVQNPSYDLYKPVTKTTAKPKTEVQKIDIEGR 289

Query: 199 RQI 191
           R++
Sbjct: 290 REV 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,990,815
Number of Sequences: 59808
Number of extensions: 205038
Number of successful extensions: 430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)