Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1154X
         (379 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X86373-1|CAA60132.1|  504|Homo sapiens SRP 54 protein.                 28   8.8  
U51920-1|AAC50994.1|  504|Homo sapiens signal recognition partic...    28   8.8  
BC003389-1|AAH03389.1|  504|Homo sapiens signal recognition part...    28   8.8  
BC000652-1|AAH00652.1|  504|Homo sapiens signal recognition part...    28   8.8  

>X86373-1|CAA60132.1|  504|Homo sapiens SRP 54 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 268 AELMRKTTEKRGRS*QQGTILGKRQINPIFRKFLTALFLLGVNIKI 131
           A+L RK T    RS    TI+ +  +N + ++  TAL    VNIK+
Sbjct: 4   ADLGRKITSAL-RSLSNATIINEEVLNAMLKEVCTALLEADVNIKL 48


>U51920-1|AAC50994.1|  504|Homo sapiens signal recognition particle
           protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 268 AELMRKTTEKRGRS*QQGTILGKRQINPIFRKFLTALFLLGVNIKI 131
           A+L RK T    RS    TI+ +  +N + ++  TAL    VNIK+
Sbjct: 4   ADLGRKITSAL-RSLSNATIINEEVLNAMLKEVCTALLEADVNIKL 48


>BC003389-1|AAH03389.1|  504|Homo sapiens signal recognition
           particle 54kDa protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 268 AELMRKTTEKRGRS*QQGTILGKRQINPIFRKFLTALFLLGVNIKI 131
           A+L RK T    RS    TI+ +  +N + ++  TAL    VNIK+
Sbjct: 4   ADLGRKITSAL-RSLSNATIINEEVLNAMLKEVCTALLEADVNIKL 48


>BC000652-1|AAH00652.1|  504|Homo sapiens signal recognition
           particle 54kDa protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 268 AELMRKTTEKRGRS*QQGTILGKRQINPIFRKFLTALFLLGVNIKI 131
           A+L RK T    RS    TI+ +  +N + ++  TAL    VNIK+
Sbjct: 4   ADLGRKITSAL-RSLSNATIINEEVLNAMLKEVCTALLEADVNIKL 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,153,533
Number of Sequences: 237096
Number of extensions: 1194115
Number of successful extensions: 3198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3193
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)