Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1154X
         (379 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2195|AAF55305.1|   60|Drosophila melanogaster CG17931-P...    36   0.017
AE014297-2194|AAN13706.2|  118|Drosophila melanogaster CG17931-P...    36   0.017
AY075217-1|AAL68084.1|  231|Drosophila melanogaster AT16114p pro...    28   4.6  
AE014134-1603|AAF52746.2|  231|Drosophila melanogaster CG12439-P...    28   4.6  

>AE014297-2195|AAF55305.1|   60|Drosophila melanogaster CG17931-PA,
           isoform A protein.
          Length = 60

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGRS*QQGT 212
           +RDLAR K Q+ Q ++ K K       L +++    DAELMR+  +K+  +   GT
Sbjct: 6   QRDLARQKNQKKQADLTKGKRTD---NLTVEQRKARDAELMREKQKKKEEAAAAGT 58


>AE014297-2194|AAN13706.2|  118|Drosophila melanogaster CG17931-PB,
           isoform B protein.
          Length = 118

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGRS*QQGT 212
           +RDLAR K Q+ Q ++ K K       L +++    DAELMR+  +K+  +   GT
Sbjct: 64  QRDLARQKNQKKQADLTKGKRTD---NLTVEQRKARDAELMREKQKKKEEAAAAGT 116


>AY075217-1|AAL68084.1|  231|Drosophila melanogaster AT16114p
           protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 279 FPSCRGKPGFSLGFFLFC 332
           F  CRGKPG + G   FC
Sbjct: 98  FSVCRGKPGCNYGLMTFC 115


>AE014134-1603|AAF52746.2|  231|Drosophila melanogaster CG12439-PA
           protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 279 FPSCRGKPGFSLGFFLFC 332
           F  CRGKPG + G   FC
Sbjct: 98  FSVCRGKPGCNYGLMTFC 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,276,445
Number of Sequences: 53049
Number of extensions: 311666
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)