Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1154X
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical ...    30   0.63 
AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen pro...    28   1.9  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U00035-5|AAA50643.1|  104|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF036703-2|AAB88557.3|  535|Caenorhabditis elegans Hypothetical ...    27   5.9  
AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...    26   7.8  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical...    26   7.8  
AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical ...    26   7.8  

>AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical
           protein Y37E3.4 protein.
          Length = 82

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 379 RRDLARAKTQRNQVEMQKRKNPSEK---PGLPLQEGNPGDAELMRKTTEK 239
           +RDLAR K Q+   + +KR+  S +    GL +      DA++MR   EK
Sbjct: 6   QRDLAREKNQKKLADQKKRQGASGQDGNAGLSMDARMNRDADVMRIKQEK 55


>AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen
           protein 112 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 352 QRNQVEMQKRKNPSEKPGLPLQEGNPGDA 266
           Q  Q      K PS +PG P  +GNPG A
Sbjct: 236 QNGQPGQPGPKGPSGQPGQPGSDGNPGPA 264


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 334 MQKRKNPSEKPGLPLQEGNPGD 269
           +Q +  PS + G P QEG PGD
Sbjct: 161 LQGQSGPSGEDGAPGQEGAPGD 182


>U00035-5|AAA50643.1|  104|Caenorhabditis elegans Hypothetical
           protein R01H2.1 protein.
          Length = 104

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 358 KTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGR 230
           +TQR Q +  KRK    + G+P +  +  D      + E RGR
Sbjct: 53  RTQRFQTQCSKRKPYEIRQGIPERSSSKQDPGNKTASIEHRGR 95


>AF036703-2|AAB88557.3|  535|Caenorhabditis elegans Hypothetical
           protein T11F8.4 protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 376 RDLARAKTQRNQVEMQKRKNPS-EKPGLPLQEGNPGDAELMRKTTEKRGRS*QQGTILGK 200
           +DL + +  +NQ E  KRKN   +K     ++G+ GD  L +    K  R  + G  L  
Sbjct: 385 KDLKKKQDAKNQ-ESDKRKNSDRKKKSERKKKGSKGDMILEKSKETKDHR--ESGRRLTD 441

Query: 199 RQINPIFRKFLTA 161
           R+ N +  K + A
Sbjct: 442 REANAVGGKSIDA 454


>AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical
           protein Y50D7A.4 protein.
          Length = 852

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 KTQRNQVEMQKRKNPSEKPGLPLQEGNPGDAELMRKTTEKRGRS 227
           K +  Q E +K+K   E+    LQ G   DAE + KT +  G +
Sbjct: 609 KQKELQEEEEKKKKDKEQKEEGLQRGPQIDAEALLKTEDPLGEA 652


>Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 15/77 (19%), Positives = 34/77 (44%)
 Frame = +3

Query: 135 LMLTPNKNRAVKNFLNMGLICRLPKMVPCC*LLPLFSVVFRINSASPGFPSCRGKPGFSL 314
           +++TP   R++   L + ++   P  + CC  + ++ +V  I    P          F +
Sbjct: 90  MIMTPFPIRSLTTTLAVVILHCPPVYLLCCISIEVWHLVSPIQYTFPKTTRLSNLQKFKI 149

Query: 315 GFFLFCISTWFLWVLAR 365
             F F + T++ +  +R
Sbjct: 150 SAFFFILETYYYYTCSR 166


>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 205 LRWFLAANSSPFFRWFSALIQHPRGFLPVGVNQAFHW 315
           L+W L  N   F+R  +ALI     + PV     FHW
Sbjct: 40  LQWDLVVNKFQFWRPLTALI-----YYPVTPQTGFHW 71


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 120  RTSPILMLTPNKNRAVKNFLNMGLICRL 203
            + S ILM +P K +  KN ++MGL  +L
Sbjct: 3565 KVSSILMCSPTKLKNNKNIMDMGLDSKL 3592


>AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical
           protein Y41C4A.16 protein.
          Length = 309

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 325 RKNPSEKPGLPLQEGNPG 272
           +K PS  PG P  +GNPG
Sbjct: 256 QKGPSGAPGQPGSDGNPG 273


>AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 15/77 (19%), Positives = 34/77 (44%)
 Frame = +3

Query: 135 LMLTPNKNRAVKNFLNMGLICRLPKMVPCC*LLPLFSVVFRINSASPGFPSCRGKPGFSL 314
           +++TP   R++   L + ++   P  + CC  + ++ +V  I    P          F +
Sbjct: 90  MIMTPFPIRSLTTTLAVVILHCPPVYLLCCISIEVWHLVSPIQYTFPKTTRLSNLQKFKI 149

Query: 315 GFFLFCISTWFLWVLAR 365
             F F + T++ +  +R
Sbjct: 150 SAFFFILETYYYYTCSR 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,349,181
Number of Sequences: 27780
Number of extensions: 164470
Number of successful extensions: 704
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)