Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1154X
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05120.1 68416.m00556 expressed protein low similarity to PrM...    28   1.8  
At5g27320.1 68418.m03262 expressed protein similar to PrMC3 [Pin...    27   4.1  
At3g43270.1 68416.m04567 pectinesterase family protein contains ...    27   5.5  
At4g12990.1 68417.m02028 expressed protein                             26   7.2  
At3g44160.1 68416.m04734 chloroplast outer membrane protein-rela...    26   7.2  
At2g20140.1 68415.m02353 26S protease regulatory complex subunit...    26   7.2  

>At3g05120.1 68416.m00556 expressed protein low similarity to
          PrMC3 [Pinus radiata] GI:5487873
          Length = 345

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 45 LNIWELLLNFRIAYNI 92
          LN W L+ NF++AYNI
Sbjct: 18 LNTWVLISNFKVAYNI 33


>At5g27320.1 68418.m03262 expressed protein similar to PrMC3
          [Pinus radiata] GI:5487873
          Length = 344

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 45 LNIWELLLNFRIAYNI 92
          LN W L+ NF++AYN+
Sbjct: 18 LNTWVLISNFKLAYNL 33


>At3g43270.1 68416.m04567 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 527

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 352 QRNQVEMQKRKNPSEKPGLPLQEGN-PGDAELM 257
           Q+N +  Q RK+P+E  G  +Q  N   D +L+
Sbjct: 387 QKNSITAQGRKDPNEPTGFTIQFSNIAADTDLL 419


>At4g12990.1 68417.m02028 expressed protein 
          Length = 96

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 138 LKLGLFVRSENFYQVICC 85
           L L +FV+S NFY  +CC
Sbjct: 29  LHLKVFVKSRNFYIWLCC 46


>At3g44160.1 68416.m04734 chloroplast outer membrane protein-related
           low similarity to chloroplastic outer envelope membrane
           protein (OEP75) [Pisum sativum] GI:633607
          Length = 362

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 273 PGFPSCR-GKPGFSLGF 320
           PG PS R GKPGF  GF
Sbjct: 308 PGNPSMRQGKPGFGYGF 324


>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
           putative similar to Swiss-Prot:P48601 26S protease
           regulatory subunit 4 (P26S4) [Drosophila melanogaster]
          Length = 443

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 362 RQNPKEPGGNAKKEKSQ*KAWFTPTGRKPRGC*INAENHRKKGEELAAR 216
           RQ  ++P G  KKEK      F P     R   +  +  ++KG E AAR
Sbjct: 11  RQGDRKPDGGEKKEKK-----FEPAAPPAR---VGRKQRKQKGPEAAAR 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,989,139
Number of Sequences: 28952
Number of extensions: 150739
Number of successful extensions: 337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)