Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1153
         (793 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YP04 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  
UniRef50_Q4YAR3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_Q25823 Cluster: Clp (C?) protein; n=24; Plasmodium|Rep:...    33   8.2  
UniRef50_P34853 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    33   8.2  
UniRef50_Q8MA04 Cluster: Maturase K; n=1; Chaetosphaeridium glob...    33   8.2  

>UniRef50_Q4YP04 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 82

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 40  PFLPFSLTHNLTFRSTLFICCILTNPTYIYI*M*VRKNGTIYIYIYFFKFK 192
           PFL FS+   L F   L +C IL    Y+++ + V     ++  IYFF +K
Sbjct: 6   PFLGFSMIIFLLFTFNLSLCYILYTINYVFVFISVFFGKLLFCLIYFFSYK 56


>UniRef50_Q4YAR3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 91

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 206 TSMCNLNLKKYMYIYIVPFFLTHIYIYIYV 117
           T   +L+L  Y+YIYI  +   +IYIYIY+
Sbjct: 11  TLSLSLSLSIYIYIYIYIYIYIYIYIYIYI 40


>UniRef50_Q25823 Cluster: Clp (C?) protein; n=24; Plasmodium|Rep:
           Clp (C?) protein - Plasmodium falciparum
          Length = 766

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 285 NVQSDT*IKRIYYTFLICNRLYAPQINFNV*FKLKKIYVYIYRTVFSDSHLY 130
           N+ +D    ++YY FL+ N+LY   I+  +    K+   Y    +  DS+ Y
Sbjct: 273 NINNDN--NKLYYLFLLLNKLYGYNIHIIIVTNKKEYNTYFKYNIIKDSYFY 322


>UniRef50_P34853 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=5; Apidae|Rep: NADH-ubiquinone oxidoreductase chain 4
           - Apis mellifera ligustica (Common honeybee)
          Length = 447

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 200 MCNLNLKKYMYIYIVPFFLTHIYIYIYVGLVRMQHMKS 87
           M NLNL   ++IY++  FL  I IY++ G +   H+++
Sbjct: 180 MLNLNLNMMLFIYLLMSFLVKIPIYLFHGWLLKAHVEA 217


>UniRef50_Q8MA04 Cluster: Maturase K; n=1; Chaetosphaeridium
           globosum|Rep: Maturase K - Chaetosphaeridium globosum
          Length = 508

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -3

Query: 791 YIF*KNKIKQ-SFNGNNYNLLMGTFAFFLISVRVGCK*KPPFYLYLKFVKKIIFYL*NFP 615
           ++F KN +K+ SFN +    L     FF   +++  K K     ++K  KKI     N P
Sbjct: 315 FLFAKNLVKKISFNQDQIFFLGFLVFFFYTKIQIRIKLKKCLVNFIKLEKKICI---NVP 371

Query: 614 IRTIISFINK 585
           I+ +I F++K
Sbjct: 372 IKLLIIFLSK 381


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,168,436
Number of Sequences: 1657284
Number of extensions: 14046115
Number of successful extensions: 31241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30599
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)