Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1153
         (793 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   3.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.5  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 125 YIYRCESEKTVRYI 166
           Y ++CE++K V+Y+
Sbjct: 44  YTWKCENQKCVKYL 57


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 363 VTYDFFVYINTYYTVLFSQ 419
           V  DF  Y   ++T+LFS+
Sbjct: 60  VLMDFIAYFFNFWTILFSR 78


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 486 KNTSI*KNPFNIMSNL--VRTIS 424
           +NTSI K PF++  N+  VR +S
Sbjct: 647 RNTSIIKIPFDVFRNMLPVRNVS 669


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 89  FSYVAFLPILHIYIYRCESEKTVRYIYTY 175
           FS+   L  +++Y  +  +  T + +YTY
Sbjct: 13  FSFCCILFFIYLYWQQTSNLTTSKLLYTY 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,477
Number of Sequences: 336
Number of extensions: 4344
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)