Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1153
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    27   4.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   7.1  

>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -3

Query: 191 LNLKKYMYIYIVPFFLTHIYIYIYVGLVRMQHMKSVERNVK 69
           LNLK+ ++++   +F+ HIYI I + +        ++  ++
Sbjct: 431 LNLKESIHVWKELYFIVHIYILIALAVFNSPIRSKLDNKIR 471


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 423 FAGRREQYSRYLYRQKNRKSQNKTYIFGIVNLVRVLY 313
           F+ RRE Y+R+L   ++ KSQ    + G++N V  L+
Sbjct: 129 FSERREIYNRFLEIMRDFKSQALDTL-GVINRVSELF 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,447
Number of Sequences: 5004
Number of extensions: 67504
Number of successful extensions: 166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)