Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1153
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0298 - 16603417-16603775,16604015-16604203,16604420-166045... 29 3.2
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 29 3.2
10_02_0166 - 6065088-6065093,6066671-6068544,6068643-6069548,606... 29 4.2
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558... 29 4.2
03_04_0146 - 17688710-17688781,17689186-17689437 29 4.2
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272... 29 5.6
06_01_0091 - 749409-749846 29 5.6
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 28 7.4
05_07_0276 + 28899378-28899953,28900010-28901242 28 7.4
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142... 28 9.8
04_01_0234 + 2963364-2963520,2963931-2964053,2964134-2964205,296... 28 9.8
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 28 9.8
02_03_0053 - 14475106-14475126,14475171-14475512,14475969-144760... 28 9.8
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 28 9.8
>10_08_0298 -
16603417-16603775,16604015-16604203,16604420-16604540,
16604671-16604880
Length = 292
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 468 KNPFNIMSNLVRTISFAGRREQYSRYLYRQKNRKSQNKTYIFGIV 334
K N+ +V +I + ++ S Y+ N KSQ ++Y+F ++
Sbjct: 68 KTKDNVFVTVVASIQYRAMEDKASDAYYKLSNPKSQIQSYVFDVI 112
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 13 CYSVSHSLFPFLPFSLTHNLTFRSTLFICCILTNPTY 123
CYS HS+FP + S++ F LFIC + Y
Sbjct: 355 CYS-GHSVFPNIYQSMSDRTKFTKALFICFAICTAIY 390
>10_02_0166 -
6065088-6065093,6066671-6068544,6068643-6069548,
6069623-6069676,6069751-6069808
Length = 965
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 80 VPHFSYVAFLPILHIYIYRCESEKTVRYIYTYIF 181
VP+ Y+ + HI + C S K V+Y++ YI+
Sbjct: 636 VPYNPYLLRMYNCHINVEVCSSIKAVKYLFKYIY 669
>10_02_0129 +
5584585-5584732,5586567-5586968,5587038-5587106,
5587181-5587234,5587309-5588214,5588313-5590283,
5590833-5591235,5591845-5591857
Length = 1321
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 80 VPHFSYVAFLPILHIYIYRCESEKTVRYIYTYIF 181
VP+ Y+ + HI + C S K V+Y++ YI+
Sbjct: 823 VPYNPYLLRMYNCHINVEVCSSIKAVKYLFKYIY 856
>03_04_0146 - 17688710-17688781,17689186-17689437
Length = 107
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 320 CYISIIDINFI*M--YSLIHKLSEFTIHF*FATACMRP 213
C + I D+NF+ + + L +LS+F IH F C++P
Sbjct: 57 CGVLIWDVNFVGILDFDLGLQLSDFVIHAAFQPECLKP 94
>06_03_0434 +
20725996-20726026,20726300-20726947,20727168-20727230,
20727300-20727458,20727750-20728247,20729068-20729321,
20729448-20729829,20729938-20730204,20730530-20730789
Length = 853
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 80 VPHFSYVAFLPILHIYIYRCESEKTVRYIYTYIF 181
VP+ Y+ + HI + C S K V+Y++ YI+
Sbjct: 684 VPYNPYLLRMFNCHINVEVCSSIKAVKYLFKYIY 717
>06_01_0091 - 749409-749846
Length = 145
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 72 NVPFHTFHMLHSYQSYIY 125
N PFH FH LHS+ + Y
Sbjct: 126 NDPFHGFHSLHSFTEHCY 143
>10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 188 NLKKYMYIYIVPFFLTHIYIYIY----VGLVRMQHMKSV 84
N++K + +Y++ FLT Y Y VGL QHM SV
Sbjct: 1071 NIRK-LVLYLIYMFLTFTYFTFYGMVAVGLTPTQHMASV 1108
>05_07_0276 + 28899378-28899953,28900010-28901242
Length = 602
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = -3
Query: 779 KNKIKQSFNGNNYNLLMGTFAFFLISVRVGCK*KPPFYLYLKFVKKIIFYL 627
+ ++ + N +N+ ++G F L+ R+G + P F+L + V I+ ++
Sbjct: 347 ERRLSKVANPSNHLAIVGNFVGALLGARMGLREGPIFFLAVGLVHYIVLFV 397
>10_06_0114 -
10911713-10911724,10913642-10913772,10913869-10914229,
10914339-10915081,10918916-10918964,10919063-10919334,
10919426-10919519,10919618-10920000,10920504-10920575,
10920656-10920778,10920875-10921048,10921115-10921579,
10921662-10921839
Length = 1018
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 119 HIYIYRCESEKTVRYIYTYIF 181
HI + C S K+V+Y+Y Y++
Sbjct: 715 HINVEACASIKSVKYLYKYVY 735
>04_01_0234 +
2963364-2963520,2963931-2964053,2964134-2964205,
2964709-2964979,2965301-2965380,2966075-2967292,
2968137-2968315
Length = 699
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 119 HIYIYRCESEKTVRYIYTYIF 181
HI + C S K+V+Y+Y Y++
Sbjct: 346 HINVEACASIKSVKYLYKYVY 366
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 119 HIYIYRCESEKTVRYIYTYIF 181
HI + C S K+V+Y+Y Y++
Sbjct: 874 HINVEACASIKSVKYLYKYVY 894
>02_03_0053 -
14475106-14475126,14475171-14475512,14475969-14476099,
14476198-14477230,14477495-14477702,14477761-14477807,
14477906-14477971,14478644-14478804,14478985-14479118,
14479244-14479452
Length = 783
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 119 HIYIYRCESEKTVRYIYTYIF 181
HI + C S K+V+Y+Y Y++
Sbjct: 325 HINVEACASIKSVKYLYKYVY 345
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 119 HIYIYRCESEKTVRYIYTYIF 181
HI + C S K+V+Y+Y Y++
Sbjct: 812 HINVEACASIKSVKYLYKYVY 832
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,895,207
Number of Sequences: 37544
Number of extensions: 311667
Number of successful extensions: 456
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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