Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1153
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               31   1.1  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 233 ATACMRPK*TSMCNLNLKKYMYIYIVPFFLTHIYIYIYV 117
           A A  RP   SM  + +  Y+Y+Y+  +   ++Y+Y+YV
Sbjct: 253 AYASRRP--FSMLRVYVYVYVYVYVYVYVYVYVYVYVYV 289



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIYV 117
           Y+Y+Y+  +   ++Y+Y+YV
Sbjct: 272 YVYVYVYVYVYVYVYVYVYV 291



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIYV 117
           Y+Y+Y+  +   ++Y+Y+YV
Sbjct: 274 YVYVYVYVYVYVYVYVYVYV 293


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIYVGL 111
           Y+Y+Y+  +   ++Y+YIY+ L
Sbjct: 60  YVYVYVYVYVYVYVYVYIYIYL 81



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIY 120
           Y+YIYI  +   +IYIYIY
Sbjct: 10  YIYIYIYIYIYIYIYIYIY 28



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIYV 117
           Y+Y+Y+  +   ++Y+Y+YV
Sbjct: 54  YVYVYVYVYVYVYVYVYVYV 73



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIYV 117
           Y+Y+Y+  +   ++Y+Y+YV
Sbjct: 56  YVYVYVYVYVYVYVYVYVYV 75



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIYV 117
           Y+Y+Y+  +   ++Y+Y+Y+
Sbjct: 58  YVYVYVYVYVYVYVYVYVYI 77



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIYV 117
           Y Y+Y+  +   ++Y+Y+YV
Sbjct: 52  YTYVYVYVYVYVYVYVYVYV 71



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 176 YMYIYIVPFFLTHIYIYIY 120
           Y+Y+Y+  +   +IYIY+Y
Sbjct: 64  YVYVYVYVYVYVYIYIYLY 82


>SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 282 HLNKVNVNYTNITHGLS*-----RCQKYRFCFVTYDFFV 383
           H + +N  YT   HG S      +C K  FCF+T +F V
Sbjct: 107 HTSSLNCEYTIDKHGKSLSLHDLKCAKRSFCFLTNNFIV 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,117,251
Number of Sequences: 59808
Number of extensions: 423671
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)