Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1153
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    28   6.7  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    28   6.7  
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    28   6.7  

>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 182 KKYMYIYIVPFFLTHIYIYIY 120
           KKY YIY++  F+T  + Y Y
Sbjct: 124 KKYFYIYMLGSFITFAFYYFY 144


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 63  SQLNVPFHTFHM--LHSYQSYIYIYIDVSQKKRYDIYIHI 176
           SQL++   TF     H+  S IY+Y+D+ Q   YD+ I I
Sbjct: 249 SQLSILLQTFFFCFFHAVTSLIYVYMDIFQV--YDMLIFI 286


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -1

Query: 628 YETFQSEQ**VLSISYMHSV*NKDDILRIMRNHKTFFVLIT*KDYCKKKYVHLKESLQYN 449
           + TF S +    +++YM S  N D ++ ++RN +T F  I      +  +  +KE L+  
Sbjct: 296 FATFDSNK---KTLNYMTSKKNLDSVIFLLRNFETLFYKIQEISKIESSFSLVKEILKSI 352

Query: 448 VKFGENHFFC 419
             F  +   C
Sbjct: 353 EVFSNDSIIC 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,336
Number of Sequences: 27780
Number of extensions: 364521
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)