Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1152
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 33 0.031
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 33 0.055
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 30 0.29
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.51
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 29 0.68
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.89
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 28 1.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.1
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 2.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.6
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 4.8
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 6.3
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 8.3
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 8.3
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.3
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 33.5 bits (73), Expect = 0.031
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 91 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKK 270
++A ++K EV T P S V++ P+KK + +E T E +P EK PK
Sbjct: 440 ESAEEQKPSKEPEVKPTTPSASKVEE-PSKKRDEDNHQKEETVTQPKREKTPVEKSFPKP 498
Query: 271 AT 276
A+
Sbjct: 499 AS 500
Score = 29.9 bits (64), Expect = 0.39
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 106 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 246
K+E P E + +P SPV S K E +E K +DEAP+ +P
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAP 530
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 32.7 bits (71), Expect = 0.055
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKATMH 282
D+ A +E + E E + + E E ++ T+E P+++P EK+ K +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 283 LRTVMP 300
V+P
Sbjct: 106 FYDVVP 111
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 30.3 bits (65), Expect = 0.29
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVM----PKKATMHLRT 291
E+ + EP E+P S KVE A + AP + A P KA L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 292 VMPQKRKRLV 321
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.51
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKK 270
+E + KES K++PA+K + + ENGT+E + PA++ +K
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK--PAKRTRKRK 97
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 29.1 bits (62), Expect = 0.68
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 142 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKAT-MHLRTVMPQKRK 312
+P +PVKKS K A + N + + S A PK A+ L P++RK
Sbjct: 195 QPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRK 252
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 112 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEK 255
++ PE+ + + PVKK P+KK + A++N E DE + E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE 104
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 79 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKV 258
A A A + + +V+ + + +PK++PV S A + A N + T E + S +K+
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKE-KKSSGKQKI 265
Query: 259 MPKK 270
KK
Sbjct: 266 ASKK 269
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 ATMADAAVDKKEVAPEEVTSTEPKESPVKK-SPAKKVEAAESNGKENGTDEAPEDSPAE 252
++ D + K + + +S EP + VKK +KK E + S + + E S +E
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSE 102
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 91 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEK 255
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA K
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPAAK 129
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.6
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = -1
Query: 293 TVLRCIVAFFGITFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 114
TV+ V + + SS SSV + LLS++ F + F TG S S+ + +G+
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542
Query: 113 SFLSTAASAIV 81
S S +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 97 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKAT 276
++D+ +P ++S K SP K+ +K ++A + TDE P D T
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSDFIRLNSEESVGT 645
Query: 277 MHLRT 291
LRT
Sbjct: 646 SSLRT 650
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 6.3
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -1
Query: 332 FPLHTSLFLFCGITVLRCIVAFFGITFSAGESSGA-SSVPFSLPLLSAASTFLAGDFLTG 156
+ + +LFL IT+ F G TF+AG A ++P L +L A + ++ G
Sbjct: 455 YATYLTLFLLALITLTNGFTVFVGHTFTAGNFIAAYITLPIFL-VLYVAHKLWSRNWSFG 513
Query: 155 DSFGSVEVTSSGA 117
++VT+ A
Sbjct: 514 KRIEEIDVTTGVA 526
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE-----APEDSPAEKVMPKKATMHLR 288
EE + +S V +KKV+ +++GKE+ E + +K+ K + L
Sbjct: 108 EEDLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLD 167
Query: 289 TVMPQKRKRLV 321
QKRKR V
Sbjct: 168 DSHTQKRKRKV 178
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 348 HQEPQISSS-HQSLSFLWHHRSQMHRCFLRHHLFSRRIFW 232
H E +S HQ L +W Q CF + F RR+ +
Sbjct: 435 HSEKMMSPVFHQFLDCVWQIMDQFPNCFEFNERFLRRLLY 474
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 239 SSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 78
SSG++ VP S+P L L D+ T + + ATSF T S I A
Sbjct: 168 SSGSTGVPKSMPFLMKKYA-LGYDYGTPEFMNHLSTPMVMATSFALTTLSWINA 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,414
Number of Sequences: 5004
Number of extensions: 48625
Number of successful extensions: 208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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