Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1152
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 35 0.048
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 33 0.25
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 32 0.45
At1g56660.1 68414.m06516 expressed protein 32 0.45
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 31 0.59
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 31 0.59
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 31 0.59
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 31 0.59
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 31 0.59
At2g25670.2 68415.m03077 expressed protein 31 0.59
At2g25670.1 68415.m03076 expressed protein 31 0.59
At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar ... 31 1.0
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 31 1.0
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 30 1.8
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 1.8
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 30 1.8
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta... 29 2.4
At4g07380.1 68417.m01133 hypothetical protein 29 2.4
At1g34590.1 68414.m04299 hypothetical protein 29 2.4
At4g31880.1 68417.m04531 expressed protein 29 3.1
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 3.1
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin... 29 4.1
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 29 4.1
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 29 4.1
At2g24310.1 68415.m02906 expressed protein 29 4.1
At4g26630.1 68417.m03837 expressed protein 28 5.5
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 5.5
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 28 7.2
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 28 7.2
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 28 7.2
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 28 7.2
At1g04430.1 68414.m00434 dehydration-responsive protein-related ... 28 7.2
At5g64690.1 68418.m08131 neurofilament triplet H protein-related... 27 9.6
At5g63530.1 68418.m07974 copper chaperone (CCH)-related low simi... 27 9.6
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 27 9.6
At5g19950.3 68418.m02375 expressed protein 27 9.6
At5g19950.2 68418.m02374 expressed protein 27 9.6
At5g19950.1 68418.m02373 expressed protein 27 9.6
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c... 27 9.6
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 27 9.6
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 27 9.6
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.1 bits (77), Expect = 0.048
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 106 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKA 273
KKE + E+ +S+E + P KK PA K+ + + D++ EDS EK KKA
Sbjct: 153 KKESSSEDDSSSE--DEPAKK-PAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKA 205
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEK 255
++V + KE VKK P KKVE+++ + E+ +E + PA+K
Sbjct: 42 KDVIAAVQKEKAVKKVP-KKVESSDDSDSESEEEEKAKKVPAKK 84
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 136 STEPKESPVKKSPAKKVEAAESNGKENGTDEAPED-SPAEKVMPKKAT 276
S + K + K +PA A+ S+ + +DE ED PA+K KA+
Sbjct: 195 SEDEKPATKKAAPAAAKAASSSDSSDEDSDEESEDEKPAQKKADTKAS 242
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 103 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 252
+K E APE EV S P E +++PA AAE N EN ++E E++P E
Sbjct: 67 EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAEETPDE 116
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 151 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKAT 276
ESP KS KK AAES ++G +E +SPA K K+A+
Sbjct: 76 ESPAVKS-GKKEGAAESPAVKSGNNEGATESPAVKSGKKRAS 116
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE-KVMPKK 270
+K E PEE KE + +K E E +GK+N E E E K PKK
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKK 196
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 139 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVM 261
T+PK P + PA++ ++ + + DE+ ED +EK M
Sbjct: 53 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGM 93
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKE--NGTDEAPEDSPA---EKVMPK 267
D + E+ E +E+P K P K ES K +G P +PA +K K
Sbjct: 99 DSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEK 158
Query: 268 KATMHLRTVMPQKR 309
K H T P K+
Sbjct: 159 KKGGHTATPHPAKK 172
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 139 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVM 261
T+PK P + PA++ ++ + + DE+ ED +EK M
Sbjct: 136 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGM 176
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKE--NGTDEAPEDSPA---EKVMPK 267
D + E+ E +E+P K P K ES K +G P +PA +K K
Sbjct: 182 DSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEK 241
Query: 268 KATMHLRTVMPQKR 309
K H T P K+
Sbjct: 242 KKGGHTATPHPAKK 255
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 31.5 bits (68), Expect = 0.59
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 91 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKK 270
D AV V S+ KE ++ +KK+E AE +EN +E + + K KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 271 ATMHLRTVMPQK 306
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 31.5 bits (68), Expect = 0.59
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 91 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKK 270
D AV V S+ KE ++ +KK+E AE +EN +E + + K KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 271 ATMHLRTVMPQK 306
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 106 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKK 270
+K P+++ S E P K+ K + + ++NG DEA E S ++V+PK+
Sbjct: 169 RKASLPKKIDSKPEPELPPKEPKIKNLFDLNNEPEDNGLDEA-EGSTFQEVVPKE 222
>At2g25670.2 68415.m03077 expressed protein
Length = 318
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/70 (21%), Positives = 32/70 (45%)
Frame = +1
Query: 106 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKATMHL 285
K+ A E +++ K+ K+ K+ + ++N + DEA P E+ P +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 286 RTVMPQKRKR 315
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At2g25670.1 68415.m03076 expressed protein
Length = 318
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/70 (21%), Positives = 32/70 (45%)
Frame = +1
Query: 106 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKATMHL 285
K+ A E +++ K+ K+ K+ + ++N + DEA P E+ P +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 286 RTVMPQKRKR 315
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar to
variable surface lipoprotein Vsp422-3 (GI:15384285)
[Mycoplasma bovis]; similar to glycine-rich protein
atGRP-6, Arabidopsis thaliana, PIR:T49893
Length = 225
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKATMHLRTVMP 300
E+ E ++ P K PA+ + + + G ED P +K P + H+ MP
Sbjct: 150 EDKLPAEEEKPPQKDKPAEGHKPPQKDKPAEGDKPVEEDKPPQKDKPAEGDKHVEEDMP 208
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKATMHLRTVMPQ 303
+E S + K K + K ES+ E+ + E+S EKV PKK + V +
Sbjct: 305 DEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKKKDSDVEMVDAE 364
Query: 304 KR 309
++
Sbjct: 365 QK 366
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEA-AESNGKENGTDEAPEDSPAEK 255
++ +S++ + P+KK A +A AES+ ++G+ E +PA+K
Sbjct: 184 DDDSSSDEETVPMKKQTAVLEKAKAESSSSDDGSSSDEEPTPAKK 228
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 115 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 243
V PEE++ ++PK+S A+K+E N KE T E P D+
Sbjct: 302 VNPEEISESKPKQS--VDEVARKIEGFHIN-KEGKTAEKPSDA 341
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 255 GDAEESNDASENGDATEKKET 317
GD+ E+N+ASE+GD E K T
Sbjct: 281 GDSVEANNASEDGDTVEDKNT 301
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 85 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEK 255
M D + PE+ EPK+ + P K+ EA + GK+ G EAP+ +K
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEG--EAPKKEEEKK 116
>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile: PF00226
DnaJ domain;
Length = 218
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 154 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 249
SP + S EA G DEAP++SP+
Sbjct: 44 SPARNSSEVSAEAETEGGSSTAVDEAPKESPS 75
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKKATMH 282
D + + EEV+ E + K K E ++NG++NGT+ + ++ KK +
Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVELPAKKRVVK 144
Query: 283 LRTVMP--QKRKR 315
+ +P RKR
Sbjct: 145 NKAGLPGVNSRKR 157
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 79 ATMADAAVDKKEVAPEEVTSTEPKES-PVKKSPA-KKVEAAESNGKENGTDEAPEDSPAE 252
A DAA + + A V ++E + PV + A K+V + + K+ T + S AE
Sbjct: 494 AAPVDAAPSEAQEAEPSVAASEAVVALPVSDTAAGKRVRVDDESSKKKKTKKKTSGSEAE 553
Query: 253 KVMP 264
KV+P
Sbjct: 554 KVLP 557
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Frame = +1
Query: 94 AAVDKKEVAPEEVTSTEPKESPVKKSPAK-----------KVEAAESNGKENGTDEAPED 240
A+ KKE + TS++ K PVK PAK S KE+ ++ E+
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESEE 844
Query: 241 SPAEKVMPKKA 273
+P E KA
Sbjct: 845 TPKEPEPATKA 855
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKVMPKK 270
DKKE EEV S PK KK +K EAA + ++ E E +K KK
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAA-VDAEDESAAEKSEKKKKKKDKKKK 556
>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP2
[GI:4097545]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 392
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 85 MADAAVDKKEVAPEEVTSTEPKESPV-KKSPAKKVEAA-ESNG--KENGTDEAPEDSPAE 252
++ A KKE P E K SP ++ PA+K AA E G KE E E +
Sbjct: 89 VSTVAPPKKETPPSS-GGAEKKPSPAAEEKPAEKKPAAVEKPGEKKEEKKKEEGEKKASP 147
Query: 253 KVMPKKATMHLRT 291
PK++T+ L+T
Sbjct: 148 PPPPKESTVVLKT 160
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 91 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPE 237
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGE 465
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = +1
Query: 106 KKEVAPEEVTSTEPKESPVKK--SPAKKVEAAESNGKENGTDE-APEDSPAE-KVMPKKA 273
K+E + T P ++K S A K E NG NG E A ED P+ P K
Sbjct: 51 KQEHEAKSSKRTRPASKVIEKDASEASKEETPSENGMNNGDHEVASEDGPSSVSKDPAKT 110
Query: 274 TMHLRTVMPQKRKRL 318
T P+ K L
Sbjct: 111 TERFAPREPKPPKVL 125
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 133 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKV 258
+S+ K +PV SP+ +ESN + + SP+EKV
Sbjct: 142 SSSTAKTTPVSASPSVNARVSESNLNSSSSTTPVSVSPSEKV 183
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPA-KKVEAAESNGKENGTDEAPEDSPAEKVMPKKATM 279
D + +P+ + + E+P+K SPA K + E K G +D P++KV+
Sbjct: 632 DDSDTSPKASSKRKKSENPIKASPAPSKSASKEKPVKRAGKG---KDKPSDKVLKNAIVE 688
Query: 280 HLRTV 294
L+ V
Sbjct: 689 ILKRV 693
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Frame = +1
Query: 76 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPA--------KKVEAAESNGKENGTDEA 231
L T + V + EV P EP+E PV +P VEAA S+ +N T +
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAASSSSSDNKTVVS 199
Query: 232 P 234
P
Sbjct: 200 P 200
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 118 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 243
A + TS E K+S KS + +GK+ EAPE++
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENN 256
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +1
Query: 106 KKEVAPEEVTSTEPKESPVKKSPAKKVEA---AESNGKENGTDEAPEDSPAEKVMPK--- 267
KK+ EE T EP ES K+ K E+ AE+ +E E+ E + E+ K
Sbjct: 769 KKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKPKH 828
Query: 268 -KATMHLRTVMPQKRKR 315
+ + T P+K+K+
Sbjct: 829 DEEEVPNETEKPEKKKK 845
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 258 DAEESNDASENGDATEKKETGVKRKS 335
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 258 DAEESNDASENGDATEKKETGVKRKS 335
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED---SPAEKVMPKKA 273
++K EE+ E K S KS +K+ E E + K++ E E+ SP+ PKK+
Sbjct: 20 ERKRREAEELAVREKKISKKHKSKSKEEEKPEKSKKKSKKYEEVEEEEKSPSPSPSPKKS 79
>At1g04430.1 68414.m00434 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 623
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 281 CIVAFFG---ITFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDS 150
C+VA F + S GAS++ + L S++L+GD GD+
Sbjct: 19 CVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDDNGDT 65
>At5g64690.1 68418.m08131 neurofilament triplet H protein-related
contains weak similarity to neurofilament triplet H
protein (200 kDa neurofilament protein) (Neurofilament
heavy polypeptide) (NF-H) (Swiss-Prot:P12036) [Homo
sapiens]
Length = 344
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 145 PKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEK 255
PK+S VK K AE N E+ + PE+ A+K
Sbjct: 147 PKDSDVKTPETPKANEAEDNFSESWEVKFPEELEAKK 183
>At5g63530.1 68418.m07974 copper chaperone (CCH)-related low
similarity to copper homeostasis factor [GI:3168840];
nearly identical to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 355
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 103 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEK 255
+KK A EE E K K+ KKV+ AE G++ +D+ P++ + K
Sbjct: 5 EKKPEAAEEKKMEEKKPEEKKEGEDKKVD-AEKKGED--SDKKPQEGESNK 52
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEK 255
+E T T P + V + +K E+ S + TDE+ D AEK
Sbjct: 289 DEATHTNPADEHVVE---RKEESTSSEDSSSPTDESQNDGSAEK 329
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 151 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 252
ES VK + +K E++E +G + GT++ + +PA+
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPAD 270
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 151 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 252
ES VK + +K E++E +G + GT++ + +PA+
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPAD 270
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 151 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 252
ES VK + +K E++E +G + GT++ + +PA+
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPAD 270
>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 173
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 121 PEEVTSTE--PKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEKV 258
P + +STE P SP K+ P K+ E A ++ E +A SPA+++
Sbjct: 45 PSDPSSTEEKPAASPAKEVPVKRPEEA-NDVVEKTQQKASAASPAKEI 91
>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 639
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 36 FYSLFKLFHFFNLPCNNGRRSRRQEGSCT 122
FYSL F++ CNN +EGSC+
Sbjct: 229 FYSLASEPQQFSIYCNNSNYVEEREGSCS 257
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 124 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED----SPAEKVMPKKATM 279
+++ S P+ V SP+++ +A +E T P+D SP++K P TM
Sbjct: 887 KQLKSMCPQTEQVASSPSQEQQALNPEEEEYATSTNPQDSKLSSPSDKDTPSMNTM 942
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,269,955
Number of Sequences: 28952
Number of extensions: 249262
Number of successful extensions: 979
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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