Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1151
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    32   0.074
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    32   0.074
SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subu...    27   3.7  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   4.9  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   6.4  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   8.5  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 367 RYSFNVLYFFVTTEVVRRLQINDSVNNFFDCLN--LTIELYVFVLSMYVDLDTVFNAFDL 540
           R  F+ +Y +V   +   L +   +  +    N  L +EL VF+ +++ D+ T+  A+D 
Sbjct: 768 RQIFHRMYAYVVYRIALSLHLEIFLGLWLIIRNQLLNLELIVFI-AIFADVATLAIAYDN 826

Query: 541 TPYPVLPTHKNKPNI 585
            PY + P   N P +
Sbjct: 827 APYAMKPVKWNLPRL 841


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 367 RYSFNVLYFFVTTEVVRRLQINDSVNNFFDCLN--LTIELYVFVLSMYVDLDTVFNAFDL 540
           R  F+ +Y +V   +   L +   +  +    N  L +EL VF+ +++ D+ T+  A+D 
Sbjct: 680 RQIFHRMYSYVVYRIALSLHLEIFLGLWLIIRNQLLNLELVVFI-AIFADVATLAIAYDN 738

Query: 541 TPYPVLPTHKNKPNI 585
            PY + P   N P +
Sbjct: 739 APYSMKPVKWNLPRL 753


>SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subunit
           Rpc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 129

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 502 YVDLDTVFNAFDLTPYPVLPTHKNKPNISP 591
           ++D   +FN F+LT   +L    NKP+  P
Sbjct: 70  FLDCIAIFNEFELTKAEILVILNNKPSSVP 99


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 462 KTIKKIVYG-IIYLQPSHYFSRYEKIQNIETV 370
           K ++++VY  +I +  SH+F+  E IQN+  V
Sbjct: 609 KKVRQLVYDDLIRIGRSHHFANIELIQNVVLV 640


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 545 RTRCCQHTKTNLTYPR*VYIFNSNFTNKPNLDVLDKYLSLRH*KKKFCL 691
           + RC +HT   + +     +  SN   K N+    K + L H +K+ CL
Sbjct: 351 KRRCAKHTSWQVIFTEDFELQESNILQKLNMKQTAKDVMLEH-QKQRCL 398


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 554 TGYGVKSNALNTVSKSTYIDNTNTYSSIV---RLRQSKKLFTESFICS 420
           T Y  + NAL  ++KS  ID TN  +++     + Q  K+   + +CS
Sbjct: 204 TAYICRKNALLQINKSLTIDGTNISANLSCTHLVIQIPKVIQATLVCS 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,086
Number of Sequences: 5004
Number of extensions: 49166
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)