Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1151
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    36   0.040
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    29   2.6  

>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 133 VISQIVYLVSLFNYHRYMFAAWS*LINFIMSSV--LPLILCNFVCIL 267
           ++SQ+   +S  NY ++  A WS L  F  SS   LP I+C+FV +L
Sbjct: 236 MLSQLRLKISKSNYQKHRNAIWSLLAQFATSSTIFLPPIVCSFVILL 282


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +1

Query: 391 FFVTTEVVRRLQINDSVNNFFDCLNLTIELYVFVLSMYVDLDTVFNAFDLTPYPVLPTHK 570
           FFV + ++ R+  N  +N  FD  ++TI L   +  + + +  +   FD     +     
Sbjct: 247 FFVISMLISRMYTNSGINKLFD--HVTISL-TTIFPIIISISYIKTRFDFKTVILSVFRA 303

Query: 571 NKPNISP 591
           N+  +SP
Sbjct: 304 NRSEVSP 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,002,311
Number of Sequences: 27780
Number of extensions: 265546
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)