Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1151
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    27   0.18 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    27   0.18 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    27   0.18 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    25   0.74 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.7  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = -2

Query: 521 TVSKSTYIDNTNTYSSIVRLR 459
           T++++TY D ++ YS+++R+R
Sbjct: 92  TINETTYTDGSDDYSTLIRVR 112


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = -2

Query: 521 TVSKSTYIDNTNTYSSIVRLR 459
           T++++TY D ++ YS+++R+R
Sbjct: 140 TINETTYTDGSDDYSTLIRVR 160


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = -2

Query: 521 TVSKSTYIDNTNTYSSIVRLR 459
           T++++TY D ++ YS+++R+R
Sbjct: 140 TINETTYTDGSDDYSTLIRVR 160


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -2

Query: 518 VSKSTYIDNTNTYSSIVRLR 459
           ++++TY D ++ YS+++R+R
Sbjct: 141 INETTYTDGSDDYSTLIRVR 160


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 214 FIMSSVLPLILCNFVCILPRILVVFFGTKI 303
           + ++ +LP +L +F+C+L   L    G K+
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKV 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,600
Number of Sequences: 438
Number of extensions: 3431
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)