Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1150
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 159 1e-40
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 159 1e-40
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 130 8e-32
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 130 8e-32
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 130 8e-32
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 77 1e-15
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 43 3e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 2e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 38 0.001
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 9.7
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 9.7
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.7
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 159 bits (387), Expect = 1e-40
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGGTIEPSLRILAMKYNCEKMI 254
RLRGG IEPSL+ LA KYNCEK I
Sbjct: 72 RLRGGIIEPSLKALASKYNCEKQI 95
Score = 62.9 bits (146), Expect = 2e-11
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +2
Query: 254 CRKCYARLHPRATNCRKTKCGHTNNLRP 337
CRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 96 CRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 159 bits (387), Expect = 1e-40
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGGTIEPSLRILAMKYNCEKMI 254
RLRGG IEPSL+ LA KYNCEK I
Sbjct: 72 RLRGGIIEPSLKALASKYNCEKQI 95
Score = 62.9 bits (146), Expect = 2e-11
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +2
Query: 254 CRKCYARLHPRATNCRKTKCGHTNNLRP 337
CRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 96 CRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 130 bits (315), Expect = 8e-32
Identities = 62/65 (95%), Positives = 65/65 (100%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGG 197
RLRGG
Sbjct: 72 RLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 130 bits (315), Expect = 8e-32
Identities = 62/65 (95%), Positives = 65/65 (100%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGG 197
RLRGG
Sbjct: 72 RLRGG 76
Score = 130 bits (315), Expect = 8e-32
Identities = 62/65 (95%), Positives = 65/65 (100%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 88 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147
Query: 183 RLRGG 197
RLRGG
Sbjct: 148 RLRGG 152
Score = 130 bits (315), Expect = 8e-32
Identities = 62/65 (95%), Positives = 65/65 (100%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 164 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 223
Query: 183 RLRGG 197
RLRGG
Sbjct: 224 RLRGG 228
Score = 130 bits (315), Expect = 8e-32
Identities = 62/65 (95%), Positives = 65/65 (100%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 240 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 299
Query: 183 RLRGG 197
RLRGG
Sbjct: 300 RLRGG 304
Score = 130 bits (315), Expect = 8e-32
Identities = 62/65 (95%), Positives = 65/65 (100%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 316 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 375
Query: 183 RLRGG 197
RLRGG
Sbjct: 376 RLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 130 bits (315), Expect = 8e-32
Identities = 62/65 (95%), Positives = 65/65 (100%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGG 197
RLRGG
Sbjct: 72 RLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 77.4 bits (182), Expect = 1e-15
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = +3
Query: 6 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 185
I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLVL
Sbjct: 13 IELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLA 72
Query: 186 LRGGT 200
LRGG+
Sbjct: 73 LRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 42.7 bits (96), Expect = 3e-05
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 15 EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHLVLRLR 191
+V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +V R +
Sbjct: 17 DVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCMVSRPK 76
Query: 192 GGTIEP 209
T P
Sbjct: 77 TSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 18 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 188
V++ ++ +K I I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 12 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 170
LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 15 LEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 133 LFQTITSRKNPHFTW 177
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 39 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 158
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 123 DGRTLSDYNIQKESTLHLVLRLR 191
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,267
Number of Sequences: 5004
Number of extensions: 35949
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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