Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1150
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 1e-31
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 1e-31
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 132 1e-31
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 132 1e-31
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 124 5e-29
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 106 8e-24
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 68 4e-12
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 7e-11
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 52 2e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 39 0.002
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 36 0.012
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 36 0.016
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.021
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 33 0.11
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07) 33 0.15
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 28 4.3
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 28 4.3
SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 27 9.9
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 27 9.9
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGG 197
RLRGG
Sbjct: 72 RLRGG 76
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGG 197
RLRGG
Sbjct: 72 RLRGG 76
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 88 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147
Query: 183 RLRGG 197
RLRGG
Sbjct: 148 RLRGG 152
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 164 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 223
Query: 183 RLRGG 197
RLRGG
Sbjct: 224 RLRGG 228
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 240 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 299
Query: 183 RLRGG 197
RLRGG
Sbjct: 300 RLRGG 304
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 316 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 375
Query: 183 RLRGG 197
RLRGG
Sbjct: 376 RLRGG 380
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 392 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 451
Query: 183 RLRGG 197
RLRGG
Sbjct: 452 RLRGG 456
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 468 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 527
Query: 183 RLRGG 197
RLRGG
Sbjct: 528 RLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGG 197
RLRGG
Sbjct: 72 RLRGG 76
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 88 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147
Query: 183 RLRGG 197
RLRGG
Sbjct: 148 RLRGG 152
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 164 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 223
Query: 183 RLRGG 197
RLRGG
Sbjct: 224 RLRGG 228
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 240 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 299
Query: 183 RLRGG 197
RLRGG
Sbjct: 300 RLRGG 304
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 316 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 375
Query: 183 RLRGG 197
RLRGG
Sbjct: 376 RLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 132 bits (319), Expect = 1e-31
Identities = 64/65 (98%), Positives = 64/65 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
Sbjct: 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Query: 183 RLRGG 197
RLRGG
Sbjct: 72 RLRGG 76
Score = 79.4 bits (187), Expect = 1e-15
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
T TL+VEASDT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYNI++ S LHL L
Sbjct: 87 TFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHLFL 146
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 124 bits (298), Expect = 5e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +3
Query: 75 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 254
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSLRILA KYNC+KMI
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRILAQKYNCDKMI 61
Query: 255 AVNAMP 272
N P
Sbjct: 62 CRNYGP 67
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 106 bits (255), Expect = 8e-24
Identities = 51/52 (98%), Positives = 51/52 (98%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 158
TITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 90 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 141
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 67.7 bits (158), Expect = 4e-12
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 254 CRKCYARLHPRATNCRKTKCGHTNNLRP 337
CRKCYARLHPRATNCRK KCGH+NNLRP
Sbjct: 46 CRKCYARLHPRATNCRKKKCGHSNNLRP 73
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 159 ESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 254
ESTLHLVLRLRGG IEPSLRILA KYNC+KMI
Sbjct: 14 ESTLHLVLRLRGGVIEPSLRILAQKYNCDKMI 45
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 159 ESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 254
ESTLHLVLRLRGG IEPSLRILA KYNC+KMI
Sbjct: 14 ESTLHLVLRLRGGVIEPSLRILAQKYNCDKMI 45
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = +3
Query: 33 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPS 212
TI VK I+ K G P DQQRL+F G+ L D T I +TLHL++RL GG P+
Sbjct: 93 TIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLIVRLLGGEC-PT 151
Query: 213 LRI 221
R+
Sbjct: 152 YRL 154
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQ---DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 164
T +E+ +T+ +K KI+ K+ P +LI+AGK L D L +YNI ++S
Sbjct: 78 TFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLKEYNIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 45 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 158
+K++I+ K GIP D QRL F K+L D TL+ N+++
Sbjct: 32 LKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 9 TLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 185
TL+V +EN +A ++ + G+P + L G QL D +TL+ Y++++ + +V R
Sbjct: 14 TLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAYSVKENDVILMVRR 73
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 35.5 bits (78), Expect = 0.021
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 66 KEGIPPDQQRLIFAGKQLEDGRTLSDYN 149
+EGIP ++QRLIF GK L+D + L +++
Sbjct: 19 EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 34.7 bits (76), Expect = 0.037
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 12 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 191
L++ + TIE ++ ++ DK G PP QR I K + +L +++ + L
Sbjct: 50 LQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRETGFTAYLYLLS 109
Query: 192 GGTIE 206
G +E
Sbjct: 110 GRNVE 114
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 72 GIPPDQQRLIFAGKQLEDGRTLSDYN 149
GIP ++QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
Length = 642
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 367 GYYLILDLLFGSQIVSVSALCLATVGSTRMKTGIAFTAIIFS 242
G +++ LL G+ V +S+LC A GS KTG ++T F+
Sbjct: 19 GPAIVISLLIGAIPVCLSSLCYAEFGSRISKTGSSYTYTYFA 60
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 33 TIENVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 176
T+ ++K + +K G+ RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 94 VSSLPGNN*KMAALFQTITSRKNPHFTWF 180
+ ++ N K+AA+ I+S NP FTWF
Sbjct: 8 IGAIASNAEKVAAVAGAISSLDNPGFTWF 36
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/78 (21%), Positives = 38/78 (48%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 182
++ + D +V +I+D G + + G + D + +++ + L LVL
Sbjct: 241 SVDATLRGQDISASVYQEIRDLGGTGVIALKPVMRGPDINDDGSHERESLRANAVLPLVL 300
Query: 183 RLRGGTIEPSLRILAMKY 236
R++GG + +R LA+++
Sbjct: 301 RMKGGE-DSQVRDLAVRF 317
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +3
Query: 3 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 167
T+ +E+ ++E++KA+ + + GIP + RL LED + + +++T
Sbjct: 194 TLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHLQKAT 248
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 81 PDQQRLIFAGKQLEDGRTLSDY--NIQKESTLHLVLRLRGGTI 203
PD ++ I G L+DG+T+ D + ++E L+ ++ GT+
Sbjct: 538 PDSKKNILEGLDLQDGKTVEDLLSDYRRELELYRQIKDENGTV 580
>SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 9 TLEVE-ASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 125
T E+E A +++E + I GIP D+Q L+ G + D
Sbjct: 14 TFEMEMAMESVETLMGSIASSTGIPVDKQVLLICGGEALD 53
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 6 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 185
ITL + ++ + G P + ++ K LED T++D + Q +TL + L+
Sbjct: 178 ITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQPGATLQIELQ 237
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 79 LQTNNVSSLPGNN*KM-AALFQTITSRK--NPHFT--WF*DLEEVQLNLPFAFS 225
++ NNVSS PG N + + TI +RK NP T WF + Q + AF+
Sbjct: 641 VECNNVSSCPGGNVTLNCSAMATIDTRKLSNPVMTSEWFYYRDLTQRRIKRAFN 694
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,908
Number of Sequences: 59808
Number of extensions: 288278
Number of successful extensions: 717
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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