Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1148
(341 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 33 0.061
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 33 0.080
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 0.24
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 31 0.24
SB_4801| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.75
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 0.99
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_48158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 27 4.0
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25) 26 7.0
SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 26 7.0
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 26 7.0
SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2) 26 9.2
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 33.1 bits (72), Expect = 0.061
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 26 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESN 190
CNPD+ ++ ++S AP TP AT V T T PV + + E + N
Sbjct: 77 CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPTPPVTTQQADNYQEYQLN 131
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 32.7 bits (71), Expect = 0.080
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 2 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 130
R + LP++ + D++ SRL DG L + A R T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 2 RRYALPENCNPDTVESRLSSDGVLTVIA 85
R Y LP+ + TV SR++ DG+L + A
Sbjct: 85 RSYNLPDGVDVSTVSSRITGDGLLHIEA 112
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 35 DTVESRLSSDGVLTVIAPRTPAATKNERAVPITQT-GPVRKEIKEPTAEVESNETK 199
D V ++L+ V TV+ P TP T + PI T PVR E+++ A+ ++ K
Sbjct: 329 DGVITKLTDASVYTVVIPTTPRTTTAVTS-PIPSTKSPVRIEVRKQKAKAPADTNK 383
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 31.1 bits (67), Expect = 0.24
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 2 RRYALPENCNPDTVESRLSSDGVLTVIA-PRTPAATKNERAVPITQ 136
R Y LPE + ++ +R++ DG+L V A ++P AT +A P T+
Sbjct: 51 RCYNLPEGVDESSISTRIAEDGMLHVEALKKSPPATTENKA-PATK 95
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 2 RRYALPENCNPDTVESRLSSDGVLTVIAPRTP 97
R + LP + DT+ RL DGVL + A + P
Sbjct: 144 RHFVLPREVDMDTLVPRLGKDGVLYIEADKRP 175
>SB_4801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 272 STHEECNKINTRYTFLIHSVPRVIVLFRCSQLPQWAP 162
S H+E N +I++ P V L RC + P+W P
Sbjct: 99 SIHKERNSTQFINISIINTAPTVRALSRCRKNPRWVP 135
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 29.1 bits (62), Expect = 0.99
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 191 ETKQ*LSERCESKKCSVC 244
E K+ LS RCES KC +C
Sbjct: 1244 ELKEHLSNRCESLKCKIC 1261
>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1533
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 153 RRLRSPLRKLRATKQNNDSRNAVNQKSVACVNFIAFLVRACETDRFIVFI 302
RR +S ++ +QNN SR +KSV + FI + T IVFI
Sbjct: 1469 RRHQSQIQDQATEEQNNISRGKKIRKSVLTLVFIWLIYPLSYTTHLIVFI 1518
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 44 ESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESNE 193
+S SS+ AP+ PAA +N +A PV+K K ++E ES+E
Sbjct: 48 DSSSSSESDSEEEAPKKPAAKQNGKAKKQNGKAPVKKAAKS-SSESESDE 96
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 138 PARSGRRLRSPLRKLRATKQNNDSRNAVNQKSVACVNFIA 257
P RS + LRS + R++ + ++S +AVNQ+ + ++++
Sbjct: 600 PLRSVKPLRSSSQATRSSSEPDESSDAVNQQLIHATDWLS 639
>SB_48158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 289 KRSVSQARTRNAIKLTHATLF*F--TAFRESLFCFVALNFRSGLLNLLPDRAG-LSDG 125
+ + RT++ L H +F + + LFCF G+L+L+P R G + DG
Sbjct: 162 ENELDMKRTQSDPNLLHDEVFRYAQSTVAAMLFCFDRAKAGDGVLSLVPSRRGQIQDG 219
>SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 156 RLRSPLRKLRATKQNNDSRNAVNQKSVACVNFIAFL 263
R+R+P++ L T+ + R A V CV F+++L
Sbjct: 190 RVRNPVQSLHRTRSAQEKRLAKTLTIVTCVFFLSWL 225
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 146 PGRFE*WEQLARSSWQPESWERSRSARRQRTAE--IRQCRGYSFLAE 12
P + E W +L R W P S ER+++ T E R R YSF E
Sbjct: 792 PDQEEVWRRLPRFHWAPRSHERAQT-EPANTGERSSRVSRMYSFEPE 837
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 11 ALPEN-CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVES 187
A PE PDT + ++ T AP T AA + A T+T P + E TA E+
Sbjct: 797 AAPETTAAPDTTAAPETTAAPETTAAPETTAAPETTAAPETTET-PETTAVPETTAAPET 855
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Frame = +2
Query: 74 TVIAPRTPAATKNERA-----VPITQTGPVRKEIKEPTAEVES 187
T +AP TP AT A P T PV + E TA E+
Sbjct: 817 TTVAPETPVATNTTVAQETTLTPETTAAPVTTSVPETTAAPET 859
>SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)
Length = 203
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 177 KLRATKQNNDSRNAVNQKSVACVNFIAFLVRACETDRFIVF 299
K TK++N+ +K C N L+R C T R F
Sbjct: 25 KPAVTKRDNEVVEETEKKHPICTNTSCGLLRECSTSRIARF 65
>SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +2
Query: 86 PRTPAATKNERAVPITQTGPVRKEIKEPTAEVESNETKQ*LSERCESKKCSVC 244
P+T ++ K + Q GP+ KE + S Q + +R + + +C
Sbjct: 409 PKTTSSAKLRALSVVKQKGPIEKEDPNAVRKKRSPSAIQTVGKRVDKDQSGIC 461
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 26.2 bits (55), Expect = 7.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 32 PDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVES 187
P+T + ++D T +AP T AA + A P T P E TA E+
Sbjct: 1816 PETTVAPETTDAPATTLAPETTAALETTVA-PETTAAPETTVAPEITAATET 1866
Score = 25.8 bits (54), Expect = 9.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 17 PENCN-PDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVES 187
PE + P+T + ++D T +AP T AA + A P T P E TA E+
Sbjct: 1578 PETTSAPETTVAPETTDAPATTLAPETTAALETTVA-PETTAAPETTVPPEITAATET 1634
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 11 ALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVES 187
AL P+T + ++D T +AP T AA + A P T P E T E+
Sbjct: 1279 ALETTMAPETTAAAETTDEPATTMAPETTAAPETSLA-PETTAAPETSAAPETTMVPET 1336
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 32 PDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESNETK 199
P+T ++D T +AP T AA K A P T P E + A + ETK
Sbjct: 3030 PETTSVPATTDAPATTLAPETTAAPKTTVA-PETTVAP---ETTDAPATTMAPETK 3081
>SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 127 HHSNRPGPEGD*GAHC 174
HH +PGPE D HC
Sbjct: 38 HHKEKPGPEVDYFHHC 53
>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
Length = 853
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 110 SSWQPESWERSRSARRQRTAEIRQCRGYSFLA 15
+ W+ + E S +RQ + RQCR Y LA
Sbjct: 640 AEWEALTREIRTSRQRQLVTDERQCRSYLTLA 671
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 32 PDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVES 187
P+T +++ G T AP T A + A P T P E TA E+
Sbjct: 2599 PETTSGPMTTTGPETTAAPETTAVPETS-AAPETAAVPETTAASETTAAPET 2649
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 25.8 bits (54), Expect = 9.2
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 47 SRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESNETKQ*LSER--- 217
SR S+ T A R+P T ++ T T V + ++ SN+ K+ R
Sbjct: 1324 SRFSAKRARTDTARRSPLKTDKRASLKTTPTSSVPSPLCPSSSSKSSNQLKRSRPARVPS 1383
Query: 218 -CESKK 232
CESK+
Sbjct: 1384 GCESKR 1389
>SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 149 RKEIKEPTAEVESNETKQ*LSERCESKKCS 238
R +++ T + E N Q LSER E+ CS
Sbjct: 68 RPNLRKETVDEEHNRLFQALSERTEAATCS 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,997,355
Number of Sequences: 59808
Number of extensions: 189982
Number of successful extensions: 685
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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