Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1148
(341 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 35 0.016
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 32 0.12
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo... 29 0.61
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 29 0.61
At3g15250.1 68416.m01926 expressed protein ; expression supporte... 29 0.81
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 28 1.9
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 27 3.3
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit... 27 4.3
At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containi... 26 5.7
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit... 26 7.6
At4g14830.1 68417.m02280 expressed protein 26 7.6
At2g19800.1 68415.m02313 expressed protein similar to myo-inosit... 26 7.6
At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase fam... 26 7.6
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 25 10.0
At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM do... 25 10.0
At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase fam... 25 10.0
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 34.7 bits (76), Expect = 0.016
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 2 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPIT 133
RR+ LPEN + V++ + + GVLTV+ P+ P +++ I+
Sbjct: 116 RRFRLPENAKMEEVKATMEN-GVLTVVVPKAPEKKPQVKSIDIS 158
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 2 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPIT 133
RR+ LPEN D V++ + +GVLTV P+ + +++ I+
Sbjct: 110 RRFRLPENVKMDQVKAAM-ENGVLTVTVPKAETKKADVKSIQIS 152
>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
chloroplast precursor (HSP25.3-P) identical to small
heat shock protein, chloroplast precursor SP:P31170 from
[Arabidopsis thaliana]; identified in Scharf, K-D., et
al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 227
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 5 RYALPENCNPDTVESRLSSDGVLTVIAPRTPAATK 109
R LP+NC D +++ L +GVL + P+T K
Sbjct: 187 RLQLPDNCEKDKIKAEL-KNGVLFITIPKTKVERK 220
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 29.5 bits (63), Expect = 0.61
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 2 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPIT 133
RR+ LPEN + V++ + +GVL+V P+ + ++V I+
Sbjct: 113 RRFRLPENAKVEEVKASM-ENGVLSVTVPKVQESKPEVKSVDIS 155
>At3g15250.1 68416.m01926 expressed protein ; expression supported
by MPSS
Length = 217
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 26 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVE 184
CN S S+ T +PRT +T N+ PI Q P+ ++K P + +
Sbjct: 75 CNSTNSSSSFGSNNSSTSQSPRTSYSTSNKNNSPINQE-PLDLKLKPPISRCD 126
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 104 TKNERAVPITQTGPVRKEIKEPTAEVESNET 196
++ +AVP T+ P+R + P SN+T
Sbjct: 43 SQRSKAVPTTKVSPMRSPVTSPNGTTPSNKT 73
>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
protein-like (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 232
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 11 ALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 130
+LP++ + +++ L + GVL ++ PRT KN + + +
Sbjct: 193 SLPDDAKVEDIKAELKN-GVLNLVIPRTEKPKKNVQEISV 231
>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 317
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 233 TFLIHSVPRVIVLFRCSQLPQWA 165
T LIH + +VI L + LPQWA
Sbjct: 149 TALIHDLGKVITLPQFGGLPQWA 171
>At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 761
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 145 RAGLSDGNSSLVLRGSRSPGSDHGQHAVRGQPRFDSVGVTVFWQSV 8
R G S+ +L+LR G H +H + P+ S+ V+W S+
Sbjct: 39 RRGFSN-EEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSL 83
>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 314
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 233 TFLIHSVPRVIVLFRCSQLPQWA 165
T LIH + +V+ L + LPQWA
Sbjct: 146 TALIHDLGKVLTLPQFGGLPQWA 168
>At4g14830.1 68417.m02280 expressed protein
Length = 152
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 5 RYALPENCNPDTVESRLSSDGVLTVIAPR 91
R+ LPE+ P+ V DG L V P+
Sbjct: 111 RFRLPESTRPELVTVDCDGDGELIVTVPK 139
>At2g19800.1 68415.m02313 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 317
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 233 TFLIHSVPRVIVLFRCSQLPQWA 165
T LIH + +V++L LPQWA
Sbjct: 149 TALIHDLGKVLLLPEFGGLPQWA 171
>At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 580
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 41 VESRLSSDGVLTVIAPRTPAATKNERAVPI 130
+ +S + V++V+AP TPA + AVP+
Sbjct: 57 ISLNISKNDVVSVMAPNTPALYEMHFAVPM 86
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = +2
Query: 35 DTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESNETKQ*LSE 214
DTV++ S+ +A A + P T V+ +K P E +T+ ++E
Sbjct: 898 DTVDNNFSAHVAFLDVADGEKAFESSLEKCPFTSNSTVKFRLKYPNERTEEKKTEAEVAE 957
>At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM
domain-containing protein similar to polyamine oxidase
isoform-1 [Homo sapiens] GI:14860862; contains Pfam
profile:PF01593 Flavin containing amine oxidase
Length = 746
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 172 SGLLNLLPDRAGLSDGNSSLVLRGSRSPGSDHGQHAVRGQPRFDSV 35
+GL L R LS G LVL G PG + G+ RF +V
Sbjct: 167 AGLAGLAAARQLLSFGFKVLVLEGRSRPGGRVYTQKMGGKDRFAAV 212
>At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 535
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 41 VESRLSSDGVLTVIAPRTPAATKNERAVPI 130
+ ++ + V++V+AP TPA + AVP+
Sbjct: 57 ISLNIAKNDVVSVVAPNTPAIYEMHFAVPM 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,756,123
Number of Sequences: 28952
Number of extensions: 123167
Number of successful extensions: 409
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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